{ "type": "genome", "identifier": "GCF_001043175.1", "organism": "Marinobacter psychrophilus", "title": "Marinobacter psychrophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Institute of Genomics, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001043175.1", "bioproject": "PRJNA224116", "biosample": "SAMN03701403", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "330734", "species_taxid": "330734", "organism_name": "Marinobacter psychrophilus", "infraspecific_name": "strain=20041", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/30", "asm_name": "ASM104317v1", "asm_submitter": "Beijing Institute of Genomics, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_001043175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/043/175/GCF_001043175.1_ASM104317v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3998597", "genome_size_ungapped": "3998597", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001043175.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3671", "protein_coding_gene_count": "3537", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-30", "dateModified": "2015-06-30", "datePublished": "2015-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter psychrophilus" ], "sample_taxid": [ "330734" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Arctic Ocean: Canadian Basin" ], "sample_host_location_id": [], "data_size": "1.136 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3998597", "Number of Sequences": "1", "Longest Sequences (bp)": "3998597", "N50 (bp)": "3998597", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "3649", "Average Protein Length": "323.2", "Coding Ratio (%)": "88.5", "Number of rRNAs": "9", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter psychrophilus", "strain": "strain=20041", "accession": "GCA_001043175.1", "taxid": 330734, "species_taxid": 330734, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1332, "total_fragments": 1332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter gelidimuriae", "strain": "strain=BF04_CF-4", "accession": "GCA_000372805.1", "taxid": 2739064, "species_taxid": 2739064, "relation_to_type": "type", "validated": true, "ani": 91.7271, "matched_fragments": 837, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter antarcticus", "strain": "strain=CGMCC 1.10835", "accession": "GCA_900142385.1", "taxid": 564117, "species_taxid": 564117, "relation_to_type": "type", "validated": true, "ani": 79.2468, "matched_fragments": 353, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maritimus", "strain": "strain=CK47", "accession": "GCA_007671675.1", "taxid": 277961, "species_taxid": 277961, "relation_to_type": "type", 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77.8525, "matched_fragments": 184, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 77.8494, "matched_fragments": 253, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 77.7935, "matched_fragments": 290, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 77.7676, "matched_fragments": 244, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lipolyticus", "strain": "strain=SM19", "accession": "GCA_000397065.2", "taxid": 209639, "species_taxid": 209639, "relation_to_type": "type", "validated": true, "ani": 77.7214, "matched_fragments": 242, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 77.7025, "matched_fragments": 265, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", "accession": "GCA_014652295.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 77.6307, "matched_fragments": 248, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maroccanus", "strain": "strain=N4", "accession": "GCA_002933275.1", "taxid": 2055143, "species_taxid": 2055143, "relation_to_type": "type", "validated": true, "ani": 77.6199, "matched_fragments": 276, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 77.485, "matched_fragments": 256, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter changyiensis", "strain": "strain=CLL7-20", "accession": "GCA_009193265.1", "taxid": 2604091, "species_taxid": 2604091, "relation_to_type": "type", "validated": true, "ani": 77.3827, "matched_fragments": 196, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vulgaris", "strain": "strain=F01", "accession": "GCA_003344045.1", "taxid": 1928331, "species_taxid": 1928331, "relation_to_type": "type", "validated": true, "ani": 77.3481, "matched_fragments": 248, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 77.3419, "matched_fragments": 190, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 77.3167, "matched_fragments": 166, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 76.0242, "matched_fragments": 50, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001043175.1", "gtdb_species": "s__Marinobacter psychrophilus", "ani": 100.0, "matched_fragments": 1331, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000169375.1", "gtdb_species": "s__Marinobacter sp000169375", "ani": 93.1469, "matched_fragments": 1067, "total_fragments": 1332, "gtdb_taxonomy": 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