{ "tc_result": [ { "organism_name": "[Haemophilus] ducreyi", "strain": "strain=CIP 54.2", "accession": "GCA_001043455.1", "taxid": 730, "species_taxid": 730, "relation_to_type": "type", "validated": true, "ani": 99.9791, "matched_fragments": 508, "total_fragments": 519, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "[Haemophilus] ducreyi", "strain": "strain=ATCC 33940", "accession": "GCA_900109315.1", "taxid": 730, "species_taxid": 730, "relation_to_type": "type", "validated": true, "ani": 99.8791, "matched_fragments": 496, "total_fragments": 519, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "[Haemophilus] ducreyi", "strain": "strain=CCUG 4438", "accession": "GCA_002015155.1", "taxid": 730, "species_taxid": 730, "relation_to_type": "type", "validated": true, "ani": 99.8548, "matched_fragments": 495, "total_fragments": 519, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinobacillus equuli", "strain": "strain=NCTC8529", "accession": "GCA_900636745.1", "taxid": 718, "species_taxid": 718, "relation_to_type": "type", "validated": true, "ani": 79.2747, "matched_fragments": 223, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus capsulatus", "strain": "strain=DSM 19761", "accession": "GCA_000374285.1", "taxid": 717, "species_taxid": 717, "relation_to_type": "type", "validated": true, "ani": 78.9701, "matched_fragments": 239, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus suis", "strain": "strain=ATCC 33415", "accession": "GCA_000739435.1", "taxid": 716, "species_taxid": 716, "relation_to_type": "type", "validated": true, "ani": 78.7442, "matched_fragments": 241, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus pleuropneumoniae", "strain": "strain=4074", "accession": "GCA_000167095.1", "taxid": 715, "species_taxid": 715, "relation_to_type": "type", "validated": true, "ani": 78.6646, "matched_fragments": 182, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus ureae", "strain": "strain=ATCC 25976", "accession": "GCA_000188255.1", "taxid": 723, "species_taxid": 723, "relation_to_type": "type", "validated": true, "ani": 78.5894, "matched_fragments": 228, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia granulomatis", "strain": "strain=DSM 19156", "accession": "GCA_000621105.1", "taxid": 85402, "species_taxid": 85402, "relation_to_type": "type", "validated": true, "ani": 78.1851, "matched_fragments": 155, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia bovis", "strain": "strain=ZY190616", "accession": "GCA_014541205.1", "taxid": 2770636, "species_taxid": 2770636, "relation_to_type": "type", "validated": true, "ani": 78.1305, "matched_fragments": 151, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ursidibacter maritimus", "strain": "strain=Pb43106", "accession": "GCA_009761395.1", "taxid": 1331689, "species_taxid": 1331689, "relation_to_type": "type", "validated": true, "ani": 77.7553, "matched_fragments": 145, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900109315.1", "gtdb_species": "s__Haemophilus_B ducreyi", "ani": 99.8791, "matched_fragments": 496, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.41", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 31, "status": "conclusive" }, { "accession": "GCF_901687125.1", "gtdb_species": "s__Actinobacillus vicugnae", "ani": 79.3756, "matched_fragments": 267, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900636745.1", "gtdb_species": "s__Actinobacillus equuli", "ani": 79.2284, "matched_fragments": 223, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000374285.1", "gtdb_species": "s__Actinobacillus capsulatus", "ani": 78.9951, "matched_fragments": 238, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900444945.1", "gtdb_species": "s__Actinobacillus lignieresii", "ani": 78.7858, "matched_fragments": 200, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.69", "min_intra_species_ani": "96.41", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 35, "status": "-" }, { "accession": "GCF_000739435.1", "gtdb_species": "s__Actinobacillus suis", "ani": 78.7004, "matched_fragments": 240, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000188255.1", "gtdb_species": "s__Actinobacillus ureae", "ani": 78.5894, "matched_fragments": 228, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003101015.1", "gtdb_species": "s__Actinobacillus_A porcitonsillarum", "ani": 78.4054, "matched_fragments": 165, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000521605.1", "gtdb_species": "s__Mannheimia sp000521605", "ani": 78.314, "matched_fragments": 149, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mannheimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013377235.1", "gtdb_species": "s__Mannheimia varigena", "ani": 78.3029, "matched_fragments": 156, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mannheimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_013377255.1", "gtdb_species": "s__Mannheimia granulomatis", "ani": 78.227, "matched_fragments": 160, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mannheimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "95.73", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_004342115.1", "gtdb_species": "s__Mannheimia haemolytica", "ani": 78.1853, "matched_fragments": 142, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mannheimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 196, "status": "-" }, { "accession": "GCF_014541205.1", "gtdb_species": "s__Mannheimia bovis", "ani": 78.1296, "matched_fragments": 150, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mannheimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009761395.1", "gtdb_species": "s__Ursidibacter maritimus", "ani": 77.7352, "matched_fragments": 146, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Ursidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCA_900637275.1", "gtdb_species": "s__Actinobacillus_B aerogenes", "ani": 77.6784, "matched_fragments": 89, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013377295.1", "gtdb_species": "s__Phocoenobacter skyensis", "ani": 77.6669, "matched_fragments": 101, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Phocoenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013377195.1", "gtdb_species": "s__Bisgaardia hudsonensis", "ani": 77.5454, "matched_fragments": 115, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Bisgaardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }