{ "type": "genome", "identifier": "GCF_001043885.1", "organism": "Methylobacterium platani JCM 14648", "title": "Methylobacterium platani JCM 14648", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001043885.1", "bioproject": "PRJNA224116", "biosample": "SAMN03282444", "wgs_master": "JXOD00000000.1", "refseq_category": "na", "taxid": "1295136", "species_taxid": "427683", "organism_name": "Methylobacterium platani JCM 14648", "infraspecific_name": "strain=JCM 14648", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/30", "asm_name": "ASM104388v1", "asm_submitter": "CSIR-Institute of Microbial Technology", "gbrs_paired_asm": "GCA_001043885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/043/885/GCF_001043885.1_ASM104388v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6851766", "genome_size_ungapped": "6851766", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "554", "contig_count": "554", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001043885.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "6624", "protein_coding_gene_count": "6314", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-30", "dateModified": "2015-06-30", "datePublished": "2015-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium platani JCM 14648" ], "sample_taxid": [ "1295136" ], "sample_host_organism": [ "Platanus orientalis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.845 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6851766", "Number of Sequences": "554", "Longest Sequences (bp)": "101296", "N50 (bp)": "23491", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.1", "Number of CDSs": "6093", "Average Protein Length": "300.1", "Coding Ratio (%)": "80.1", "Number of rRNAs": "8", "Number of tRNAs": "85", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium platani", "strain": "strain=JCM 14648", "accession": "GCA_001043885.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2009, "total_fragments": 2028, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium platani", "strain": "strain=PMB02", "accession": "GCA_001653715.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 99.9393, "matched_fragments": 1962, "total_fragments": 2028, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium terrae", "strain": "strain=17Sr1-28", "accession": "GCA_003173755.1", "taxid": 2202827, "species_taxid": 2202827, "relation_to_type": "type", "validated": true, "ani": 91.7905, "matched_fragments": 1520, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 91.1, "matched_fragments": 1599, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 90.4243, "matched_fragments": 1503, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 90.4169, "matched_fragments": 1526, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 90.3397, "matched_fragments": 1389, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium ajmalii", "strain": "strain=IF7SW-B2", "accession": "GCA_016613415.1", "taxid": 2738439, "species_taxid": 2738439, "relation_to_type": "type", "validated": true, "ani": 90.2731, "matched_fragments": 1454, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium indicum", "strain": "strain=SE2.11", "accession": "GCA_001043895.1", "taxid": 1775910, "species_taxid": 1775910, "relation_to_type": "type", "validated": true, "ani": 90.2205, "matched_fragments": 1424, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 89.9121, "matched_fragments": 1514, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium variabile", "strain": "strain=DSM 16961", "accession": "GCA_001043975.1", "taxid": 298794, "species_taxid": 298794, "relation_to_type": "type", "validated": true, "ani": 89.7127, "matched_fragments": 1372, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 85.146, "matched_fragments": 1309, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 84.8963, "matched_fragments": 1258, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Martelella radicis", "strain": "strain=DSM 28101", "accession": "GCA_014196625.1", "taxid": 1397476, "species_taxid": 1397476, "relation_to_type": "type", "validated": true, "ani": 76.7658, "matched_fragments": 206, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Martelella endophytica", "strain": "strain=YC6887", "accession": "GCA_000960975.1", "taxid": 1486262, "species_taxid": 1486262, "relation_to_type": "type", "validated": true, "ani": 76.6182, "matched_fragments": 242, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 76.5074, "matched_fragments": 217, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibacterium xiamenense", "strain": "strain=HS1C4-1", "accession": "GCA_021166475.1", "taxid": 2901140, "species_taxid": 2901140, "relation_to_type": "type", "validated": true, "ani": 76.1383, "matched_fragments": 146, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 75.8101, "matched_fragments": 195, "total_fragments": 2028, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_001653715.1", "gtdb_species": "s__Methylobacterium platani", "ani": 99.9393, "matched_fragments": 1962, "total_fragments": 2028, "gtdb_taxonomy": 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