{ "type": "genome", "identifier": "GCF_001045435.1", "organism": "Chryseobacterium koreense CCUG 49689", "title": "Chryseobacterium koreense CCUG 49689", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GCAT-SEEK", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001045435.1", "bioproject": "PRJNA224116", "biosample": "SAMN03787380", "wgs_master": "LFNG00000000.1", "refseq_category": "reference genome", "taxid": "1304281", "species_taxid": "232216", "organism_name": "Chryseobacterium koreense CCUG 49689", "infraspecific_name": "strain=CCUG 49689", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/07/02", "asm_name": "ASM104543v1", "asm_submitter": "GCAT-SEEK", "gbrs_paired_asm": "GCA_001045435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/045/435/GCF_001045435.1_ASM104543v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3154203", "genome_size_ungapped": "3154203", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001045435.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2955", "protein_coding_gene_count": "2875", "non_coding_gene_count": "49", "pubmed_id": "15545478" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-07-02", "dateModified": "2015-07-02", "datePublished": "2015-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium koreense CCUG 49689" ], "sample_taxid": [ "1304281" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.888 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3154203", "Number of Sequences": "64", "Longest Sequences (bp)": "323096", "N50 (bp)": "142678", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.1", "Number of CDSs": "2829", "Average Protein Length": "320.9", "Coding Ratio (%)": "86.3", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium koreense", "strain": "strain=CCUG 49689", "accession": "GCA_001045435.1", "taxid": 232216, "species_taxid": 232216, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1016, 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"below_threshold" }, { "organism_name": "Kaistella treverensis", "strain": "strain=DSM 22251", "accession": "GCA_900114045.1", "taxid": 631455, "species_taxid": 631455, "relation_to_type": "type", "validated": true, "ani": 77.9128, "matched_fragments": 209, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.9083, "matched_fragments": 252, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella carnis", "strain": "strain=G0081", "accession": "GCA_003860585.1", "taxid": 1241979, "species_taxid": 1241979, "relation_to_type": "type", "validated": true, "ani": 77.4871, "matched_fragments": 231, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella jeonii", "strain": "strain=NCTC13459", "accession": "GCA_900638245.1", "taxid": 266749, "species_taxid": 266749, "relation_to_type": "type", "validated": true, "ani": 77.464, "matched_fragments": 258, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella jeonii", "strain": "strain=DSM 17048", "accession": "GCA_000812865.1", "taxid": 266749, "species_taxid": 266749, "relation_to_type": "type", "validated": true, "ani": 77.422, "matched_fragments": 254, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium hispalense", "strain": "strain=DSM 25574", "accession": "GCA_000708615.2", "taxid": 1453492, "species_taxid": 1453492, "relation_to_type": "type", "validated": true, "ani": 77.3452, "matched_fragments": 139, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella jeonii", "strain": "strain=DSM 17048", "accession": "GCA_900112115.1", 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