{ "tc_result": [ { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_001045685.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2103, "total_fragments": 2105, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=NCTC10332", "accession": "GCA_001457615.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.9976, "matched_fragments": 2103, "total_fragments": 2105, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_001042925.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.9915, "matched_fragments": 2083, "total_fragments": 2105, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_012987025.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.9915, "matched_fragments": 2083, "total_fragments": 2105, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_900167195.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.979, "matched_fragments": 2037, "total_fragments": 2105, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.3911, "matched_fragments": 2035, "total_fragments": 2105, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.3231, "matched_fragments": 2021, "total_fragments": 2105, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=CCUG 551", "accession": "GCA_008801675.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.2374, "matched_fragments": 1989, "total_fragments": 2105, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.6785, "matched_fragments": 936, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 81.7974, "matched_fragments": 1008, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 81.1473, "matched_fragments": 935, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001457615.1", "gtdb_species": "s__Pseudomonas aeruginosa", "ani": 99.9976, "matched_fragments": 2103, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.84", "num_clustered_genomes": 5623, "status": "conclusive" }, { "accession": "GCF_000017205.1", "gtdb_species": "s__Pseudomonas aeruginosa_A", "ani": 94.059, "matched_fragments": 1871, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.80", "num_clustered_genomes": 42, "status": "-" }, { "accession": "GCF_900187975.1", "gtdb_species": "s__Pseudomonas delhiensis", "ani": 84.8573, "matched_fragments": 1332, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.078, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900103845.1", "gtdb_species": "s__Pseudomonas jinjuensis", "ani": 84.7161, "matched_fragments": 1173, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900112375.1", "gtdb_species": "s__Pseudomonas citronellolis", "ani": 84.6593, "matched_fragments": 1363, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.078, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_017589465.1", "gtdb_species": "s__Pseudomonas sp017589465", "ani": 84.1117, "matched_fragments": 1135, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017491605.1", "gtdb_species": "s__Pseudomonas sp017491605", "ani": 83.9603, "matched_fragments": 1222, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204515.1", "gtdb_species": "s__Pseudomonas nitritireducens_A", "ani": 83.9023, "matched_fragments": 1327, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002091755.1", "gtdb_species": "s__Pseudomonas nitroreducens", "ani": 83.604, "matched_fragments": 1275, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "95.19", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_012767755.2", "gtdb_species": "s__Pseudomonas_F sp003234055", "ani": 82.852, "matched_fragments": 1261, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.89", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003205495.1", "gtdb_species": "s__Pseudomonas_E alcaligenes_B", "ani": 82.8281, "matched_fragments": 920, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003696305.1", "gtdb_species": "s__Pseudomonas_E sp003696305", "ani": 82.6705, "matched_fragments": 1027, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004801855.1", "gtdb_species": "s__Pseudomonas_K sp004801855", "ani": 82.3255, "matched_fragments": 760, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002483005.1", "gtdb_species": "s__Pseudomonas_E sp002483005", "ani": 82.2956, "matched_fragments": 561, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105885.1", "gtdb_species": "s__Pseudomonas_K guangdongensis", "ani": 82.2267, "matched_fragments": 724, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900104805.1", "gtdb_species": "s__Pseudomonas_K oryzae", "ani": 82.2187, "matched_fragments": 860, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000761545.1", "gtdb_species": "s__Pseudomonas_E sp000761545", "ani": 82.1502, "matched_fragments": 971, "total_fragments": 2105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }