{ "type": "genome", "identifier": "GCF_001046875.1", "organism": "Nostocoides jenkinsii Ben 74", "title": "Nostocoides jenkinsii Ben 74", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001046875.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3146295", "wgs_master": "CAJC00000000.1", "refseq_category": "reference genome", "taxid": "1193518", "species_taxid": "330834", "organism_name": "Nostocoides jenkinsii Ben 74", "infraspecific_name": "strain=Ben 74", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/25", "asm_name": "ASM104687v1", "asm_submitter": "Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University", "gbrs_paired_asm": "GCA_001046875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/046/875/GCF_001046875.1_ASM104687v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3809986", "genome_size_ungapped": "3788586", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "215", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001046875.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3727", "protein_coding_gene_count": "3560", "non_coding_gene_count": "61", "pubmed_id": "23178666" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-25", "dateModified": "2014-07-25", "datePublished": "2014-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Nostocoides jenkinsii Ben 74" ], "sample_taxid": [ "1193518" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.038 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3809986", "Number of Sequences": "1", "Longest Sequences (bp)": "3809986", "N50 (bp)": "3809986", "Gap Ratio (%)": "0.561682", "GCcontent (%)": "68.2", "Number of CDSs": "3620", "Average Protein Length": "317.7", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tetrasphaera jenkinsii", "strain": "strain=Ben 74", "accession": "GCA_001046875.1", "taxid": 330834, 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