{
    "type": "genome",
    "identifier": "GCF_001047075.2",
    "organism": "Fructobacillus ficulneus",
    "title": "Fructobacillus ficulneus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Faculty of Bioindustry, Tokyo University of Agriculture",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001047075.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00031991",
        "wgs_master": "BBXQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "157463",
        "species_taxid": "157463",
        "organism_name": "Fructobacillus ficulneus",
        "infraspecific_name": "strain=JCM 12225",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/06/25",
        "asm_name": "ASM104707v2",
        "asm_submitter": "Faculty of Bioindustry, Tokyo University of Agriculture",
        "gbrs_paired_asm": "GCA_001047075.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/047/075/GCF_001047075.2_ASM104707v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1552198",
        "genome_size_ungapped": "1543671",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "28",
        "contig_count": "179",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001047075.2-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "1600",
        "protein_coding_gene_count": "1502",
        "non_coding_gene_count": "53",
        "pubmed_id": "26715526"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-06-25",
    "dateModified": "2015-06-25",
    "datePublished": "2015-06-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fructobacillus ficulneus"
        ],
        "sample_taxid": [
            "157463"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.439 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1552198",
        "Number of Sequences": "28",
        "Longest Sequences (bp)": "640546",
        "N50 (bp)": "226528",
        "Gap Ratio (%)": "0.549350",
        "GCcontent (%)": "43.9",
        "Number of CDSs": "1473",
        "Average Protein Length": "300.8",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Fructobacillus ficulneus",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
                "organism_name": "Fructobacillus tropaeoli",
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                "accession": "GCA_001047135.2",
                "taxid": 709323,
                "species_taxid": 709323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0058,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fructobacillus pseudoficulneus",
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                "taxid": 220714,
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fructobacillus durionis",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fructobacillus broussonetiae",
                "strain": "strain=M2-14",
                "accession": "GCA_018437275.1",
                "taxid": 2713173,
                "species_taxid": 2713173,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Fructobacillus papyrifericola",
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                "accession": "GCA_018437235.1",
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                "species_taxid": 2713172,
                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
                "organism_name": "Fructobacillus parabroussonetiae",
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            },
            {
                "organism_name": "Fructobacillus papyriferae",
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                "accession": "GCA_018437225.1",
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                "species_taxid": 2713171,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4435,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fructobacillus fructosus",
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                "accession": "GCA_001047095.2",
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                "species_taxid": 1631,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fructobacillus fructosus",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_001047075.2",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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        ]
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        "bacillus_cell_shape": 0.75,
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    "quality": 5,
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}