{
    "type": "genome",
    "identifier": "GCF_001047675.1",
    "organism": "Yersinia aleksiciae",
    "title": "Yersinia aleksiciae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Friedrich-Loeffler-Institut",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001047675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03801505",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "263819",
        "species_taxid": "263819",
        "organism_name": "Yersinia aleksiciae",
        "infraspecific_name": "strain=159",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/07/08",
        "asm_name": "ASM104767v1",
        "asm_submitter": "Friedrich-Loeffler-Institut",
        "gbrs_paired_asm": "GCA_001047675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/047/675/GCF_001047675.1_ASM104767v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4000307",
        "genome_size_ungapped": "4000307",
        "gc_percent": "49.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-25",
        "total_gene_count": "3650",
        "protein_coding_gene_count": "3479",
        "non_coding_gene_count": "104",
        "pubmed_id": "26383649"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-07-08",
    "dateModified": "2015-07-08",
    "datePublished": "2015-07-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Yersinia aleksiciae"
        ],
        "sample_taxid": [
            "263819"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.136 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4000307",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4000307",
        "N50 (bp)": "4000307",
        "Gap Ratio (%)": "0.001050",
        "GCcontent (%)": "49.0",
        "Number of CDSs": "3539",
        "Average Protein Length": "321.2",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "22",
        "Number of tRNAs": "74",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Yersinia aleksiciae",
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                "accession": "GCA_001047675.1",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
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            {
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                "species_taxid": 634,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Yersinia bercovieri",
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                "status": "below_threshold"
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                "status": "below_threshold"
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            {
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                "status": "below_threshold"
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            {
                "organism_name": "Yersinia aldovae",
                "strain": "strain=IP06005",
                "accession": "GCA_001091225.1",
                "taxid": 29483,
                "species_taxid": 29483,
                "relation_to_type": "type",
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                "matched_fragments": 893,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
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                "species_taxid": 2703794,
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                "matched_fragments": 398,
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                "status": "below_threshold"
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            {
                "organism_name": "Serratia bockelmannii",
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                "species_taxid": 2703793,
                "relation_to_type": "type",
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                "ani": 78.9561,
                "matched_fragments": 386,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella rivi",
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                "accession": "GCA_019049655.1",
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                "relation_to_type": "type",
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                "status": "below_threshold"
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        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_001047675.1",
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}