{
    "type": "genome",
    "identifier": "GCF_001049515.1",
    "organism": "Pandoraea apista",
    "title": "Pandoraea apista",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF WARWICK",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001049515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3271083",
        "wgs_master": "CEWL00000000.1",
        "refseq_category": "na",
        "taxid": "93218",
        "species_taxid": "93218",
        "organism_name": "Pandoraea apista",
        "infraspecific_name": "strain=LMG16407",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/06/30",
        "asm_name": "Pandoraea assembly 1",
        "asm_submitter": "UNIVERSITY OF WARWICK",
        "gbrs_paired_asm": "GCA_001049515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/049/515/GCF_001049515.1_Pandoraea_assembly_1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5537404",
        "genome_size_ungapped": "5537404",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "44",
        "contig_count": "44",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-11",
        "total_gene_count": "5032",
        "protein_coding_gene_count": "4899",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-06-30",
    "dateModified": "2015-06-30",
    "datePublished": "2015-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pandoraea apista"
        ],
        "sample_taxid": [
            "93218"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.544 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5537404",
        "Number of Sequences": "44",
        "Longest Sequences (bp)": "716258",
        "N50 (bp)": "223394",
        "Gap Ratio (%)": "0.000217",
        "GCcontent (%)": "62.7",
        "Number of CDSs": "4972",
        "Average Protein Length": "319.8",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pandoraea apista",
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Pandoraea apista",
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            },
            {
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                "ani_threshold": 95,
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            {
                "organism_name": "Pandoraea communis",
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                "species_taxid": 2508297,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_902459805.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Pandoraea horticolens",
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                "species_taxid": 2508298,
                "relation_to_type": "type",
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                "status": "below_threshold"
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                "organism_name": "Paraburkholderia pallida",
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                "accession": "GCA_004524855.1",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia saeva",
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                "ani_threshold": 95,
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            },
            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia azotifigens",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
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                "species_taxid": 101571,
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            {
                "organism_name": "Polycyclovorans algicola",
                "strain": "strain=TG408",
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                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinicola aestuarinus",
                "strain": "strain=CPA62",
                "accession": "GCA_003206645.1",
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                "accession": "GCF_001465595.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
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                "mean_intra_species_ani": "N/A",
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    "_bac2feature": {
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    "_genome_taxon": [
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        "apista"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}