{ "type": "genome", "identifier": "GCF_001050095.1", "organism": "Enterococcus massiliensis", "title": "Enterococcus massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001050095.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3443460", "wgs_master": "CVRN00000000.1", "refseq_category": "reference genome", "taxid": "1640685", "species_taxid": "1640685", "organism_name": "Enterococcus massiliensis", "infraspecific_name": "strain=AM1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/30", "asm_name": "Enterococcus massiliensis", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_001050095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/050/095/GCF_001050095.1_Enterococcus_massiliensis", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2712841", "genome_size_ungapped": "2712841", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001050095.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2694", "protein_coding_gene_count": "2583", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-30", "dateModified": "2015-06-30", "datePublished": "2015-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus massiliensis" ], "sample_taxid": [ "1640685" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.765 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2712841", "Number of Sequences": "7", "Longest Sequences (bp)": "1255494", "N50 (bp)": "503362", "Gap Ratio (%)": "0.000037", "GCcontent (%)": "39.6", "Number of CDSs": "2637", "Average Protein Length": "301.7", "Coding Ratio (%)": "88.0", "Number of rRNAs": "7", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus durans", "strain": "strain=FDAARGOS 1437", "accession": "GCA_019048325.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 80.4722, "matched_fragments": 155, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus durans", "strain": "strain=NBRC 100479", "accession": "GCA_001544215.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 80.3151, "matched_fragments": 151, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mediterraneensis", "strain": "strain=Marseille-P4358", "accession": "GCA_900604485.1", "taxid": 2364791, "species_taxid": 2364791, "relation_to_type": "type", "validated": true, "ani": 79.9115, "matched_fragments": 377, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus xiangfangensis", "strain": "strain=11097", "accession": "GCA_005405365.1", "taxid": 1296537, "species_taxid": 1296537, "relation_to_type": "type", "validated": true, "ani": 79.8649, "matched_fragments": 135, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=NBRC 101867", "accession": "GCA_007989705.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 79.1805, "matched_fragments": 157, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=FDAARGOS_1120", "accession": "GCA_016727345.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 79.159, "matched_fragments": 181, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 79.0768, "matched_fragments": 137, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=DSM 21767", "accession": "GCA_001886265.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 79.0496, "matched_fragments": 155, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus pingfangensis", "strain": "strain=241-2-2", "accession": "GCA_005405205.1", "taxid": 2559924, "species_taxid": 2559924, "relation_to_type": "type", "validated": true, "ani": 78.9939, "matched_fragments": 122, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=NCTC12361", "accession": "GCA_900447665.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 78.8526, "matched_fragments": 176, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=NBRC 100478", "accession": "GCA_001544095.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 78.7267, "matched_fragments": 174, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=DSM 20680", "accession": "GCA_001885845.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 78.7154, "matched_fragments": 174, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus phoeniculicola", "strain": "strain=ATCC BAA-412", "accession": "GCA_000394035.1", "taxid": 154621, "species_taxid": 154621, "relation_to_type": "type", "validated": true, "ani": 78.5698, "matched_fragments": 138, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 78.5167, "matched_fragments": 138, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus zengguangii", "strain": "strain=MN-17", "accession": "GCA_005145005.1", "taxid": 2571750, "species_taxid": 2571750, "relation_to_type": "type", "validated": true, "ani": 78.4967, "matched_fragments": 51, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus phoeniculicola", "strain": "strain=ATCC BAA-412", "accession": "GCA_000407505.1", "taxid": 154621, "species_taxid": 154621, "relation_to_type": "type", "validated": true, "ani": 78.4608, "matched_fragments": 138, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000407425.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 78.4155, "matched_fragments": 139, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000393835.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 78.3214, "matched_fragments": 138, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=DSM 20160", "accession": "GCA_001885955.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 78.0498, "matched_fragments": 139, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus canintestini", "strain": "strain=DSM 21207", "accession": "GCA_001885735.1", "taxid": 317010, "species_taxid": 317010, "relation_to_type": "type", "validated": true, "ani": 77.9674, "matched_fragments": 142, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus wangshanyuanii", "strain": "strain=MN05", "accession": "GCA_002197645.1", "taxid": 2005703, "species_taxid": 2005703, "relation_to_type": "type", "validated": true, "ani": 77.8819, "matched_fragments": 108, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus termitis", "strain": "strain=LMG 8895", "accession": "GCA_001730305.1", "taxid": 332950, "species_taxid": 332950, "relation_to_type": "type", "validated": true, "ani": 77.6341, "matched_fragments": 103, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus termitis", "strain": "strain=DSM 22803", "accession": "GCA_001886275.1", "taxid": 332950, "species_taxid": 332950, "relation_to_type": "type", "validated": true, "ani": 77.6031, "matched_fragments": 98, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus villorum", "strain": "strain=NBRC 100699", "accession": "GCA_007990225.1", "taxid": 112904, "species_taxid": 112904, "relation_to_type": "type", "validated": true, "ani": 77.4939, "matched_fragments": 134, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 77.2662, "matched_fragments": 111, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005405265.1", "gtdb_species": "s__Enterococcus_C songbeiensis", "ani": 98.6807, "matched_fragments": 638, "total_fragments": 901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C", 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"coding_genes": 2937.768, "rRNA16S_genes": 5.5, "tRNA_genes": 60.871, "gram_stain": 1.0, "sporulation": 0.062, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.229, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.77, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.031, "coccus_cell_shape": 0.812, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.156, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterococcus", "massiliensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }