{ "type": "genome", "identifier": "GCF_001050135.1", "organism": "Cyclobacterium amurskyense", "title": "Cyclobacterium amurskyense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001050135.1", "bioproject": "PRJNA224116", "biosample": "SAMN03846661", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "320787", "species_taxid": "320787", "organism_name": "Cyclobacterium amurskyense", "infraspecific_name": "strain=KCTC 12363", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/07/08", "asm_name": "ASM105013v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_001050135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/050/135/GCF_001050135.1_ASM105013v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6158829", "genome_size_ungapped": "6158829", "gc_percent": "38.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001050135.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4855", "protein_coding_gene_count": "4781", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-07-08", "dateModified": "2015-07-08", "datePublished": "2015-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Cyclobacterium amurskyense" ], "sample_taxid": [ "320787" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Peter the Great Gulf" ], "sample_host_location_id": [], "data_size": "1.730 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6158829", "Number of Sequences": "1", "Longest Sequences (bp)": "6158829", "N50 (bp)": "6158829", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.3", "Number of CDSs": "4770", "Average Protein Length": "361.4", "Coding Ratio (%)": "84.0", "Number of rRNAs": "12", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cyclobacterium amurskyense", "strain": "strain=KCTC 12363", "accession": "GCA_001050135.1", "taxid": 320787, "species_taxid": 320787, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2051, "total_fragments": 2052, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cyclobacterium qasimii", "strain": "strain=M12-11B", "accession": "GCA_000427295.1", "taxid": 1350429, "species_taxid": 1350429, "relation_to_type": "type", "validated": true, "ani": 82.999, "matched_fragments": 1441, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium qasimii", "strain": "strain=NBRC 106168", "accession": "GCA_007991695.1", "taxid": 1350429, "species_taxid": 1350429, "relation_to_type": "type", "validated": true, "ani": 82.9228, "matched_fragments": 1459, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium marinum", "strain": "strain=DSM 745", "accession": "GCA_000222485.1", "taxid": 104, "species_taxid": 104, "relation_to_type": "type", "validated": true, "ani": 82.8671, "matched_fragments": 1157, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium plantarum", "strain": "strain=GBPx2", "accession": "GCA_011290685.1", "taxid": 2716263, "species_taxid": 2716263, "relation_to_type": "type", "validated": true, "ani": 77.4687, "matched_fragments": 285, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola marina", "strain": "strain=SCS 3-6", "accession": "GCA_020463795.1", "taxid": 2859768, "species_taxid": 2859768, "relation_to_type": "type", "validated": true, "ani": 77.1607, "matched_fragments": 109, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium jeungdonense", "strain": "strain=KCTC 23150", "accession": "GCA_010994275.1", "taxid": 708087, "species_taxid": 708087, "relation_to_type": "type", "validated": true, "ani": 77.0589, "matched_fragments": 263, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella pelovolcani", "strain": "strain=DSM 46698", "accession": "GCA_900156785.1", "taxid": 529505, "species_taxid": 529505, "relation_to_type": "type", "validated": true, "ani": 76.2237, "matched_fragments": 75, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus lutimaris", "strain": "strain=KCTC 22630", "accession": "GCA_017051705.1", "taxid": 613197, "species_taxid": 613197, "relation_to_type": "type", "validated": true, "ani": 76.0188, "matched_fragments": 70, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001050135.1", "gtdb_species": "s__Cyclobacterium amurskyense", "ani": 100.0, "matched_fragments": 2052, "total_fragments": 2052, 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"spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Cyclobacterium", "amurskyense" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }