{
    "type": "genome",
    "identifier": "GCF_001050375.1",
    "organism": "Catenovulum maritimum",
    "title": "Catenovulum maritimum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University at Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001050375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03481869",
        "wgs_master": "LAZL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1513271",
        "species_taxid": "1513271",
        "organism_name": "Catenovulum maritimum",
        "infraspecific_name": "strain=Q1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/07/09",
        "asm_name": "ASM105037v1",
        "asm_submitter": "Shandong University at Weihai",
        "gbrs_paired_asm": "GCA_001050375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/050/375/GCF_001050375.1_ASM105037v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4549503",
        "genome_size_ungapped": "4548270",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "62",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001050375.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3748",
        "protein_coding_gene_count": "3659",
        "non_coding_gene_count": "68",
        "pubmed_id": "26036673"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-07-09",
    "dateModified": "2015-07-09",
    "datePublished": "2015-07-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Catenovulum maritimum"
        ],
        "sample_taxid": [
            "1513271"
        ],
        "sample_host_organism": [
            "Neopyropia yezoensis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: coastal area of Weihai"
        ],
        "sample_host_location_id": [],
        "data_size": "1.287 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4549503",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "734550",
        "N50 (bp)": "204442",
        "Gap Ratio (%)": "0.027102",
        "GCcontent (%)": "37.9",
        "Number of CDSs": "3671",
        "Average Protein Length": "362.8",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "4",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Catenovulum maritimum",
                "strain": "strain=Q1",
                "accession": "GCA_001050375.1",
                "taxid": 1513271,
                "species_taxid": 1513271,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1491,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Catenovulum agarivorans",
                "strain": "strain=YM01",
                "accession": "GCA_000281085.1",
                "taxid": 1172192,
                "species_taxid": 1172192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7805,
                "matched_fragments": 265,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharobesus litoralis",
                "strain": "strain=CCB-QB4",
                "accession": "GCA_003063625.1",
                "taxid": 2172099,
                "species_taxid": 2172099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7768,
                "matched_fragments": 155,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gayadomonas joobiniege",
                "strain": "strain=G7",
                "accession": "GCA_000300815.1",
                "taxid": 1234606,
                "species_taxid": 1234606,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5572,
                "matched_fragments": 121,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinifaba aquimaris",
                "strain": "strain=SM1970",
                "accession": "GCA_013328345.1",
                "taxid": 2741323,
                "species_taxid": 2741323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4847,
                "matched_fragments": 127,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas ulvae",
                "strain": "strain=UL12",
                "accession": "GCA_014925405.1",
                "taxid": 107327,
                "species_taxid": 107327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3653,
                "matched_fragments": 78,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moritella marina",
                "strain": "strain=MP-1",
                "accession": "GCA_000381865.1",
                "taxid": 90736,
                "species_taxid": 90736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6841,
                "matched_fragments": 56,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia echini",
                "strain": "strain=A3",
                "accession": "GCA_002843355.2",
                "taxid": 1982103,
                "species_taxid": 1982103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6336,
                "matched_fragments": 83,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas phenolica",
                "strain": "strain=KCTC 12086",
                "accession": "GCA_001444405.1",
                "taxid": 161398,
                "species_taxid": 161398,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5693,
                "matched_fragments": 69,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas phenolica",
                "strain": "strain=O-BC30",
                "accession": "GCA_014925335.1",
                "taxid": 161398,
                "species_taxid": 161398,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5403,
                "matched_fragments": 70,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocolwellia agarivorans",
                "strain": "strain=QM50",
                "accession": "GCA_002000085.1",
                "taxid": 1911682,
                "species_taxid": 1911682,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4363,
                "matched_fragments": 91,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas undina",
                "strain": "strain=DSM 6065",
                "accession": "GCA_000238275.4",
                "taxid": 43660,
                "species_taxid": 43660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3234,
                "matched_fragments": 69,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas prydzensis",
                "strain": "strain=DSM 14232",
                "accession": "GCA_001661495.1",
                "taxid": 182141,
                "species_taxid": 182141,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1195,
                "matched_fragments": 65,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella ulleungensis",
                "strain": "strain=KCTC 62130",
                "accession": "GCA_023283965.1",
                "taxid": 2282699,
                "species_taxid": 2282699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9178,
                "matched_fragments": 62,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001050375.1",
                "gtdb_species": "s__Catenovulum maritimum",
                "ani": 100.0,
                "matched_fragments": 1491,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Catenovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000281085.1",
                "gtdb_species": "s__Catenovulum agarivorans",
                "ani": 78.7959,
                "matched_fragments": 264,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Catenovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000568405.1",
                "gtdb_species": "s__Catenovulum agarivorans_A",
                "ani": 78.5857,
                "matched_fragments": 237,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Catenovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003063625.1",
                "gtdb_species": "s__Algibacillus sp003063625",
                "ani": 77.8239,
                "matched_fragments": 154,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Algibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007289895.1",
                "gtdb_species": "s__Catenovulum sediminis",
                "ani": 77.7284,
                "matched_fragments": 171,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Catenovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000300815.1",
                "gtdb_species": "s__Catenovulum joobiniege",
                "ani": 77.5572,
                "matched_fragments": 121,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Catenovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013328345.1",
                "gtdb_species": "s__Marinifaba aquimaris",
                "ani": 77.4628,
                "matched_fragments": 128,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Marinifaba",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014925405.1",
                "gtdb_species": "s__Pseudoalteromonas ulvae",
                "ani": 77.3653,
                "matched_fragments": 78,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002843355.2",
                "gtdb_species": "s__Colwellia echini",
                "ani": 76.6336,
                "matched_fragments": 83,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001444405.1",
                "gtdb_species": "s__Pseudoalteromonas phenolica",
                "ani": 76.5411,
                "matched_fragments": 70,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_015491935.1",
                "gtdb_species": "s__GCA-2401725 sp015491935",
                "ani": 76.5126,
                "matched_fragments": 61,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__GCA-2401725",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000498095.1",
                "gtdb_species": "s__Pseudoalteromonas sp000498095",
                "ani": 76.4587,
                "matched_fragments": 62,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002000085.1",
                "gtdb_species": "s__Pseudocolwellia agarivorans",
                "ani": 76.4363,
                "matched_fragments": 91,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudocolwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.36",
                "min_intra_species_ani": "95.36",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014641855.1",
                "gtdb_species": "s__Shewanella inventionis",
                "ani": 76.0152,
                "matched_fragments": 52,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4548270.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Catenovulum",
        "maritimum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}