{ "type": "genome", "identifier": "GCF_001050515.1", "organism": "Erwinia piriflorinigrans CFBP 5888", "title": "Erwinia piriflorinigrans CFBP 5888", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Center for Biotechnology, Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001050515.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3146270", "wgs_master": "CAHS00000000.1", "refseq_category": "reference genome", "taxid": "1161919", "species_taxid": "665097", "organism_name": "Erwinia piriflorinigrans CFBP 5888", "infraspecific_name": "strain=CFBP 5888", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/11/26", "asm_name": "ASM105051v1", "asm_submitter": "Center for Biotechnology, Bielefeld University", "gbrs_paired_asm": "GCA_001050515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/050/515/GCF_001050515.1_ASM105051v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3930655", "genome_size_ungapped": "3930655", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001050515.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3645", "protein_coding_gene_count": "3485", "non_coding_gene_count": "86", "pubmed_id": "23726521" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-11-26", "dateModified": "2013-11-26", "datePublished": "2013-11-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Erwinia piriflorinigrans CFBP 5888" ], "sample_taxid": [ "1161919" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.117 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3930655", "Number of Sequences": "25", "Longest Sequences (bp)": "941525", "N50 (bp)": "359859", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.9", "Number of CDSs": "3526", "Average Protein Length": "316.7", "Coding Ratio (%)": "85.2", "Number of rRNAs": "2", "Number of tRNAs": "68", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erwinia piriflorinigrans", "strain": "strain=CFBP 5888", "accession": "GCA_001050515.1", "taxid": 665097, "species_taxid": 665097, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1291, "total_fragments": 1295, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Erwinia tasmaniensis", "strain": "strain=Et1/99", "accession": "GCA_000026185.1", "taxid": 338565, "species_taxid": 338565, "relation_to_type": "type", "validated": true, "ani": 89.4191, "matched_fragments": 1104, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia pyrifoliae", "strain": "strain=DSM 12163", "accession": "GCA_000026985.1", "taxid": 79967, "species_taxid": 79967, "relation_to_type": "type", "validated": true, "ani": 86.8694, "matched_fragments": 996, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia amylovora", "strain": "strain=NBRC 12687", "accession": "GCA_000696075.1", "taxid": 552, "species_taxid": 552, "relation_to_type": "type", "validated": true, "ani": 85.6085, "matched_fragments": 962, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia amylovora", "strain": "strain=ATCC 15580", "accession": "GCA_017161565.1", "taxid": 552, "species_taxid": 552, "relation_to_type": "type", "validated": true, "ani": 85.6005, "matched_fragments": 969, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia amylovora", "strain": "strain=type strain: CFBP 1232", "accession": "GCA_000367625.2", "taxid": 552, "species_taxid": 552, "relation_to_type": "type", "validated": true, "ani": 85.5975, "matched_fragments": 962, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=X001", "accession": "GCA_024169515.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 81.8132, "matched_fragments": 813, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia phyllosphaerae", "strain": "strain=CMYE1", "accession": "GCA_019132875.1", "taxid": 2853256, "species_taxid": 2853256, "relation_to_type": "type", "validated": true, "ani": 79.6833, "matched_fragments": 581, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea stewartii subsp. indologenes", "strain": "strain=LMG 2632", "accession": "GCA_000757405.2", "taxid": 66270, "species_taxid": 66269, "relation_to_type": "type", "validated": true, "ani": 78.8269, "matched_fragments": 395, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6541, "matched_fragments": 374, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 78.4444, "matched_fragments": 364, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001050515.1", "gtdb_species": "s__Erwinia piriflorinigrans", "ani": 100.0, "matched_fragments": 1291, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000026185.1", "gtdb_species": "s__Erwinia tasmaniensis", "ani": 89.4191, 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