{ "type": "genome", "identifier": "GCF_001051995.2", "organism": "Thauera humireducens", "title": "Thauera humireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Eco-Environmental and Soil Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001051995.2", "bioproject": "PRJNA224116", "biosample": "SAMN03799235", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1134435", "species_taxid": "1134435", "organism_name": "Thauera humireducens", "infraspecific_name": "strain=SgZ-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/08", "asm_name": "ASM105199v2", "asm_submitter": "Guangdong Institute of Eco-Environmental and Soil Science", "gbrs_paired_asm": "GCA_001051995.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/051/995/GCF_001051995.2_ASM105199v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4171754", "genome_size_ungapped": "4171754", "gc_percent": "66.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3934", "protein_coding_gene_count": "3828", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-08", "dateModified": "2016-03-08", "datePublished": "2016-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Thauera humireducens" ], "sample_taxid": [ "1134435" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangzhou" ], "sample_host_location_id": [], "data_size": "1.139 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4171754", "Number of Sequences": "1", "Longest Sequences (bp)": "4171754", "N50 (bp)": "4171754", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "3881", "Average Protein Length": "327.5", "Coding Ratio (%)": "91.4", "Number of rRNAs": "8", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thauera humireducens", "strain": "strain=SgZ-1", "accession": "GCA_001051995.2", "taxid": 1134435, "species_taxid": 1134435, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1388, "total_fragments": 1390, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thauera propionica", "strain": "strain=KNDSS-Mac4", "accession": "GCA_002245655.1", "taxid": 2019431, "species_taxid": 2019431, "relation_to_type": "type", "validated": true, "ani": 91.6659, "matched_fragments": 1035, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 85.0154, "matched_fragments": 820, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 84.8354, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 80.8394, "matched_fragments": 630, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum anaerobium", "strain": "strain=LuFRes1", "accession": "GCA_012910705.2", "taxid": 182180, "species_taxid": 182180, "relation_to_type": "type", "validated": true, "ani": 80.0597, "matched_fragments": 573, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum buckelii", "strain": "strain=U120", "accession": "GCA_012910785.2", "taxid": 200254, "species_taxid": 200254, "relation_to_type": "type", "validated": true, "ani": 79.7074, "matched_fragments": 543, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000310225.1", "gtdb_species": "s__Thauera phenylacetica", "ani": 84.8852, "matched_fragments": 710, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000310205.1", "gtdb_species": "s__Thauera linaloolentis", "ani": 84.7481, "matched_fragments": 751, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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