{ "type": "genome", "identifier": "GCF_001053185.1", "organism": "Mycobacterium bohemicum DSM 44277", "title": "Mycobacterium bohemicum DSM 44277", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001053185.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3305052", "wgs_master": "CSTD00000000.1", "refseq_category": "na", "taxid": "1236609", "species_taxid": "56425", "organism_name": "Mycobacterium bohemicum DSM 44277", "infraspecific_name": "strain=DSM 44277", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/04/20", "asm_name": "PRJEB5741_assembly_1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_001053185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/053/185/GCF_001053185.1_PRJEB5741_assembly_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5097190", "genome_size_ungapped": "5084288", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001053185.1-RS_2024_05_19", "annotation_date": "2024-05-19", "total_gene_count": "4934", "protein_coding_gene_count": "4482", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-04-20", "dateModified": "2015-04-20", "datePublished": "2015-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium bohemicum DSM 44277" ], "sample_taxid": [ "1236609" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 84.0451, "matched_fragments": 1289, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium saskatchewanense", "strain": "strain=JCM 13016", "accession": "GCA_010729105.1", "taxid": 220927, "species_taxid": 220927, "relation_to_type": "type", "validated": true, "ani": 83.9557, "matched_fragments": 1236, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium saskatchewanense", "strain": "strain=DSM 44616", "accession": "GCA_002101875.1", "taxid": 220927, "species_taxid": 220927, "relation_to_type": "type", "validated": true, "ani": 83.9245, "matched_fragments": 1220, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=ATCC 25291", "accession": "GCA_000174035.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 83.6516, "matched_fragments": 1074, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palustre", "strain": "strain=DSM 44572", "accession": "GCA_002101785.1", "taxid": 153971, "species_taxid": 153971, "relation_to_type": "type", "validated": true, "ani": 83.6366, "matched_fragments": 1157, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 83.5256, "matched_fragments": 1143, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium seoulense", "strain": "strain=JCM 16018", "accession": "GCA_010731595.1", "taxid": 386911, "species_taxid": 386911, "relation_to_type": "type", "validated": true, "ani": 83.5146, "matched_fragments": 1231, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=DSM 44553", "accession": "GCA_002102335.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 83.2574, "matched_fragments": 1206, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=JCM 14742", "accession": "GCA_010730575.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 83.2114, "matched_fragments": 1231, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_000277125.1", "taxid": 1767, 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