{ "type": "genome", "identifier": "GCF_001078375.1", "organism": "Veillonella tobetsuensis", "title": "Veillonella tobetsuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Health Sciences University of Hokkaido", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001078375.1", "bioproject": "PRJNA224116", "biosample": "SAMD00028777", "wgs_master": "BBXI00000000.1", "refseq_category": "na", "taxid": "1110546", "species_taxid": "1110546", "organism_name": "Veillonella tobetsuensis", "infraspecific_name": "strain=ATCC BAA-2400", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/07/06", "asm_name": "ASM107837v1", "asm_submitter": "Health Sciences University of Hokkaido", "gbrs_paired_asm": "GCA_001078375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/078/375/GCF_001078375.1_ASM107837v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2161277", "genome_size_ungapped": "2161164", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001078375.1-RS_2025_01_12", "annotation_date": "2025-01-12", "total_gene_count": "2010", "protein_coding_gene_count": "1923", "non_coding_gene_count": "70", "pubmed_id": "26294617" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-07-06", "dateModified": "2015-07-06", "datePublished": "2015-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Veillonella tobetsuensis" ], "sample_taxid": [ "1110546" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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701, "total_fragments": 702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella atypica", "strain": "strain=ATCC 17744", "accession": "GCA_002959915.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 88.9057, "matched_fragments": 565, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella atypica", "strain": "strain=NCTC11830", "accession": "GCA_900460235.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 88.8822, "matched_fragments": 561, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella atypica", "strain": "strain=KON", "accession": "GCA_000318355.2", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 88.8211, "matched_fragments": 552, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella nakazawae", "strain": "strain=T1-7", "accession": "GCA_013393365.1", "taxid": 2682456, "species_taxid": 2682456, "relation_to_type": "type", "validated": true, "ani": 84.4768, "matched_fragments": 468, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella infantium", "strain": "strain=T11011-4", "accession": "GCA_002959895.1", "taxid": 1911679, "species_taxid": 1911679, "relation_to_type": "type", "validated": true, "ani": 84.037, "matched_fragments": 448, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella caviae", "strain": "strain=DSM 20738", "accession": "GCA_003992125.1", "taxid": 248316, "species_taxid": 248316, "relation_to_type": "type", "validated": true, "ani": 80.9765, "matched_fragments": 332, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella criceti", "strain": "strain=NCTC12020", "accession": "GCA_900460315.1", "taxid": 103891, "species_taxid": 103891, "relation_to_type": "type", "validated": true, "ani": 78.1845, "matched_fragments": 113, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001078375.1", "gtdb_species": "s__Veillonella tobetsuensis", "ani": 100.0, "matched_fragments": 701, "total_fragments": 702, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "97.11", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_002959915.1", "gtdb_species": "s__Veillonella atypica", "ani": 88.9057, "matched_fragments": 565, "total_fragments": 702, 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