{ "type": "genome", "identifier": "GCF_001188955.3", "organism": "Kitasatospora aureofaciens", "title": "Kitasatospora aureofaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Nebraska - Lincoln", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001188955.3", "bioproject": "PRJNA224116", "biosample": "SAMN02893937", "wgs_master": "JPRF00000000.3", "refseq_category": "na", "taxid": "1894", "species_taxid": "1894", "organism_name": "Kitasatospora aureofaciens", "infraspecific_name": "strain=ATCC 10762", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/04", "asm_name": "ASM118895v3", "asm_submitter": "University of Nebraska - Lincoln", "gbrs_paired_asm": "GCA_001188955.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/188/955/GCF_001188955.3_ASM118895v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9228164", "genome_size_ungapped": "9228164", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "107", "contig_count": "107", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001188955.3-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "8347", "protein_coding_gene_count": "7992", "non_coding_gene_count": "97", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-04", "dateModified": "2016-10-04", "datePublished": "2016-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora aureofaciens" ], "sample_taxid": [ "1894" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Missouri" ], "sample_host_location_id": [], "data_size": "2.452 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9228164", "Number of Sequences": "107", "Longest Sequences (bp)": "881164", "N50 (bp)": "228236", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.7", "Number of CDSs": "8313", "Average Protein Length": "311.0", "Coding Ratio (%)": "84.1", "Number of rRNAs": "6", "Number of tRNAs": "99", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=ATCC 10762", "accession": "GCA_001188955.3", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3021, "total_fragments": 3027, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=NRRL 2209", "accession": "GCA_000978515.1", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 99.7189, "matched_fragments": 2448, "total_fragments": 3027, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces rubellomurinus", "strain": "strain=ATCC 31215", "accession": "GCA_000961885.1", "taxid": 359131, "species_taxid": 359131, "relation_to_type": "type", "validated": true, "ani": 88.6355, "matched_fragments": 1903, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 85.4407, "matched_fragments": 1830, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora atroaurantiaca", "strain": "strain=DSM 41649", "accession": "GCA_007828955.1", "taxid": 285545, "species_taxid": 285545, "relation_to_type": "type", "validated": true, "ani": 83.7226, "matched_fragments": 1479, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 83.4435, "matched_fragments": 1652, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 82.7794, "matched_fragments": 1489, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora cheerisanensis", "strain": "strain=KCTC 2395", "accession": "GCA_000696185.1", "taxid": 81942, "species_taxid": 81942, "relation_to_type": "type", "validated": true, "ani": 82.759, "matched_fragments": 1529, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 82.655, "matched_fragments": 1472, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora griseola", "strain": "strain=JCM 3339", "accession": "GCA_014648555.1", "taxid": 2064, "species_taxid": 2064, "relation_to_type": "type", "validated": true, "ani": 82.5617, "matched_fragments": 1513, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 78.9788, "matched_fragments": 1155, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseirectus", "strain": "strain=CRXT-G-22", "accession": "GCA_014489635.1", "taxid": 2768066, "species_taxid": 2768066, "relation_to_type": "type", "validated": true, "ani": 78.2603, "matched_fragments": 1090, "total_fragments": 3027, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001188955.3", "gtdb_species": "s__Kitasatospora aureofaciens", "ani": 100.0, "matched_fragments": 3021, "total_fragments": 3027, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000716875.1", "gtdb_species": "s__Kitasatospora novaecaesareae", "ani": 89.7391, "matched_fragments": 1785, "total_fragments": 3027, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900199205.1", "gtdb_species": "s__Kitasatospora sp900199205", "ani": 89.2423, "matched_fragments": 2025, "total_fragments": 3027, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, 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