{ "type": "genome", "identifier": "GCF_001190785.1", "organism": "Gottschalkia purinilytica", "title": "Gottschalkia purinilytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001190785.1", "bioproject": "PRJNA224116", "biosample": "SAMN03840109", "wgs_master": "LGSS00000000.1", "refseq_category": "reference genome", "taxid": "1503", "species_taxid": "1503", "organism_name": "Gottschalkia purinilytica", "infraspecific_name": "strain=DSM 1384", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/08/03", "asm_name": "ASM119078v1", "asm_submitter": "Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_001190785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/190/785/GCF_001190785.1_ASM119078v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3397304", "genome_size_ungapped": "3397304", "gc_percent": "29.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001190785.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "3399", "protein_coding_gene_count": "3299", "non_coding_gene_count": "69", "pubmed_id": "26404607" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-08-03", "dateModified": "2015-08-03", "datePublished": "2015-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Gottschalkia purinilytica" ], "sample_taxid": [ "1503" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.925 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3397304", "Number of Sequences": "74", "Longest Sequences (bp)": "380998", "N50 (bp)": "165601", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.8", "Number of CDSs": "3336", "Average Protein Length": "281.2", "Coding Ratio (%)": "82.8", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gottschalkia purinilytica", "strain": "strain=DSM 1384", "accession": "GCA_001190785.1", "taxid": 1503, 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"total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tissierella praeacuta", "strain": "strain=DSM 18095", "accession": "GCA_900128955.1", "taxid": 43131, "species_taxid": 43131, "relation_to_type": "type", "validated": true, "ani": 75.8204, "matched_fragments": 103, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Abyssisolibacter fermentans", "strain": "strain=MCWD3", "accession": "GCA_001559865.1", "taxid": 1766203, "species_taxid": 1766203, "relation_to_type": "type", "validated": true, "ani": 75.7272, "matched_fragments": 129, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromonas frigoriresistens", "strain": "strain=D2Q-11", "accession": "GCA_016820655.1", "taxid": 2683708, "species_taxid": 2683708, "relation_to_type": "type", "validated": true, "ani": 75.5915, "matched_fragments": 108, "total_fragments": 1098, "ani_threshold": 95, 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