{ "type": "genome", "identifier": "GCF_001202025.1", "organism": "Pseudorhodobacter aquimaris", "title": "Pseudorhodobacter aquimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Polar Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001202025.1", "bioproject": "PRJNA224116", "biosample": "SAMN03785585", "wgs_master": "LGHS00000000.1", "refseq_category": "reference genome", "taxid": "687412", "species_taxid": "687412", "organism_name": "Pseudorhodobacter aquimaris", "infraspecific_name": "strain=KCTC 23043", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/08/04", "asm_name": "ASM120202v1", "asm_submitter": "Korea Polar Research Institute", "gbrs_paired_asm": "GCA_001202025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/202/025/GCF_001202025.1_ASM120202v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3818437", "genome_size_ungapped": "3818437", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001202025.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3820", "protein_coding_gene_count": "3579", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-08-04", "dateModified": "2015-08-04", "datePublished": "2015-08-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudorhodobacter aquimaris" ], "sample_taxid": [ "687412" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Hwang-do, Yellow Sea" ], "sample_host_location_id": [], "data_size": "1.079 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3818437", "Number of Sequences": "77", "Longest Sequences (bp)": "373797", "N50 (bp)": "166191", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.7", "Number of CDSs": "3758", "Average Protein Length": "297.7", "Coding Ratio (%)": "87.9", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudorhodobacter aquimaris", "strain": "strain=KCTC 23043", "accession": "GCA_001202025.1", "taxid": 687412, "species_taxid": 687412, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1234, "total_fragments": 1235, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudorhodobacter turbinis", "strain": "strain=S12M18", "accession": "GCA_005234135.1", "taxid": 2500533, "species_taxid": 2500533, "relation_to_type": "type", "validated": true, "ani": 87.6875, "matched_fragments": 959, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter ferrugineus", "strain": "strain=DSM 5888", "accession": "GCA_000420745.1", "taxid": 77008, "species_taxid": 77008, "relation_to_type": "type", "validated": true, "ani": 79.2246, "matched_fragments": 506, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter wandonensis", "strain": "strain=KCTC 23672", "accession": "GCA_001202035.1", "taxid": 1120568, "species_taxid": 1120568, "relation_to_type": "type", "validated": true, "ani": 79.1997, "matched_fragments": 498, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter antarcticus", "strain": "strain=CGMCC 1.10836", "accession": "GCA_900110135.1", "taxid": 1077947, "species_taxid": 1077947, "relation_to_type": "type", "validated": true, "ani": 78.5808, "matched_fragments": 485, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter antarcticus", "strain": "strain=KCTC 23700", "accession": "GCA_001202015.1", "taxid": 1077947, "species_taxid": 1077947, "relation_to_type": "type", "validated": true, "ani": 78.4884, "matched_fragments": 481, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 77.8454, "matched_fragments": 384, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 77.579, "matched_fragments": 320, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 77.5522, "matched_fragments": 334, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 77.483, "matched_fragments": 292, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquatilis", "strain": "strain=DSM 3857", "accession": "GCA_900110025.1", "taxid": 933059, "species_taxid": 933059, "relation_to_type": "type", "validated": true, "ani": 77.3869, "matched_fragments": 336, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 77.1176, "matched_fragments": 266, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 77.0984, "matched_fragments": 268, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius gelatinovorus", "strain": "strain=CECT 4357", "accession": "GCA_001458355.1", "taxid": 53501, "species_taxid": 53501, "relation_to_type": "type", "validated": true, "ani": 76.8245, "matched_fragments": 157, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius gelatinovorus", "strain": "strain=DSM 5887", "accession": "GCA_900111045.1", "taxid": 53501, "species_taxid": 53501, "relation_to_type": "type", "validated": true, "ani": 76.7397, "matched_fragments": 164, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdonatronobacter sediminivivens", "strain": "strain=IM2376", "accession": "GCA_013415485.1", "taxid": 2743469, "species_taxid": 2743469, "relation_to_type": "type", "validated": true, "ani": 76.7141, "matched_fragments": 190, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001202025.1", "gtdb_species": "s__Pseudorhodobacter aquimaris", "ani": 100.0, "matched_fragments": 1234, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudorhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005234135.1", "gtdb_species": "s__Pseudorhodobacter turbinis", "ani": 87.6691, "matched_fragments": 959, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudorhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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"status": "-" }, { "accession": "GCF_001202035.1", "gtdb_species": "s__Pseudorhodobacter wandonensis", "ani": 79.1953, "matched_fragments": 498, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudorhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110135.1", "gtdb_species": "s__Pseudorhodobacter antarcticus", "ani": 78.5808, "matched_fragments": 485, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudorhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, 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