{ "type": "genome", "identifier": "GCF_001263175.1", "organism": "Vulgatibacter incomptus", "title": "Vulgatibacter incomptus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IMTECH-CSIR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001263175.1", "bioproject": "PRJNA224116", "biosample": "SAMN03951128", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1391653", "species_taxid": "1391653", "organism_name": "Vulgatibacter incomptus", "infraspecific_name": "strain=DSM 27710", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/08/07", "asm_name": "ASM126317v1", "asm_submitter": "IMTECH-CSIR", "gbrs_paired_asm": "GCA_001263175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/263/175/GCF_001263175.1_ASM126317v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4350553", "genome_size_ungapped": "4350553", "gc_percent": "69.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001263175.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3694", "protein_coding_gene_count": "3612", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-08-07", "dateModified": "2015-08-07", "datePublished": "2015-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Vulgatibacter incomptus" ], "sample_taxid": [ "1391653" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Yakushima Island, Kagoshima Prefecture" ], "sample_host_location_id": [], "data_size": "1.171 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4350553", "Number of Sequences": "1", "Longest Sequences (bp)": "4350553", "N50 (bp)": "4350553", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "3706", "Average Protein Length": "353.4", "Coding Ratio (%)": "90.3", "Number of rRNAs": "10", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", "taxid": 1391653, "species_taxid": 1391653, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1448, 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"below_threshold" }, { "organism_name": "Corallococcus exercitus", "strain": "strain=AB043A", "accession": "GCA_003611585.1", "taxid": 2316736, "species_taxid": 2316736, "relation_to_type": "type", "validated": true, "ani": 76.4459, "matched_fragments": 242, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 76.4398, "matched_fragments": 294, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 76.3872, "matched_fragments": 285, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus llansteffanensis", "strain": "strain=CA051B", "accession": "GCA_003612055.1", "taxid": 2316731, "species_taxid": 2316731, "relation_to_type": "type", "validated": true, "ani": 76.3066, "matched_fragments": 244, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus interemptor", "strain": "strain=AB047A", "accession": "GCA_003668875.1", "taxid": 2316720, "species_taxid": 2316720, "relation_to_type": "type", "validated": true, "ani": 76.2874, "matched_fragments": 258, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus aberystwythensis", "strain": "strain=AB050A", "accession": "GCA_003612165.1", "taxid": 2316722, "species_taxid": 2316722, "relation_to_type": "type", "validated": true, "ani": 76.2574, "matched_fragments": 255, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exiguus", "strain": "strain=DSM 14696", "accession": "GCA_009909105.1", "taxid": 83462, "species_taxid": 83462, "relation_to_type": "type", "validated": true, "ani": 76.2518, "matched_fragments": 253, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 76.2, "matched_fragments": 241, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 76.1336, "matched_fragments": 282, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 76.1265, "matched_fragments": 306, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 75.5928, "matched_fragments": 134, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium zucineum", "strain": "strain=HLK1", "accession": "GCA_000017265.1", "taxid": 284016, "species_taxid": 284016, "relation_to_type": "type", "validated": true, "ani": 75.5457, "matched_fragments": 133, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium soli", "strain": "strain=LX32", "accession": "GCA_003254475.1", "taxid": 2170551, "species_taxid": 2170551, "relation_to_type": "type", "validated": true, "ani": 75.5063, "matched_fragments": 122, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, "species_taxid": 2728836, "relation_to_type": "type", "validated": true, "ani": 75.4507, "matched_fragments": 121, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas australica", "strain": "strain=DSM 1124", "accession": "GCA_000430725.1", "taxid": 364039, "species_taxid": 364039, "relation_to_type": "type", "validated": true, "ani": 75.193, "matched_fragments": 137, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus pimensis", "strain": "strain=DSM 21231", "accession": "GCA_000519345.1", "taxid": 309888, "species_taxid": 309888, "relation_to_type": "type", "validated": true, "ani": 75.0219, "matched_fragments": 95, 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