{ "type": "genome", "identifier": "GCF_001267955.1", "organism": "Roseivirga seohaensis subsp. aquiponti", "title": "Roseivirga seohaensis subsp. aquiponti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001267955.1", "bioproject": "PRJNA224116", "biosample": "SAMN03145748", "wgs_master": "JSVA00000000.1", "refseq_category": "reference genome", "taxid": "1566026", "species_taxid": "1914963", "organism_name": "Roseivirga seohaensis subsp. aquiponti", "infraspecific_name": "strain=D-25", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/08/17", "asm_name": "ASM126795v1", "asm_submitter": "FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA", "gbrs_paired_asm": "GCA_001267955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/267/955/GCF_001267955.1_ASM126795v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4083414", "genome_size_ungapped": "4083414", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001267955.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3649", "protein_coding_gene_count": "3599", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-08-17", "dateModified": "2015-08-17", "datePublished": "2015-08-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseivirga seohaensis subsp. aquiponti" ], "sample_taxid": [ "1566026" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malaysia" ], "sample_host_location_id": [], "data_size": "1.160 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4083414", "Number of Sequences": "51", "Longest Sequences (bp)": "422768", "N50 (bp)": "220370", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.2", "Number of CDSs": "3563", "Average Protein Length": "339.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseivirga seohaensis subsp. aquiponti", "strain": "strain=D-25", "accession": "GCA_001267955.1", 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76.8902, "matched_fragments": 99, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014653175.1", "gtdb_species": "s__Fabibacter thermotolerans", "ani": 76.7076, "matched_fragments": 114, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002427745.1", "gtdb_species": "s__Roseivirga sp002427745", "ani": 76.2934, "matched_fragments": 82, "total_fragments": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Roseivirga", "seohaensis", "subsp.", "aquiponti" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }