{ "type": "genome", "identifier": "GCF_001269555.1", "organism": "Pseudomonas chlororaphis subsp. piscium", "title": "Pseudomonas chlororaphis subsp. piscium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JLU", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001269555.1", "bioproject": "PRJNA224116", "biosample": "SAMN03891664", "wgs_master": "LHUZ00000000.1", "refseq_category": "na", "taxid": "1513890", "species_taxid": "587753", "organism_name": "Pseudomonas chlororaphis subsp. piscium", "infraspecific_name": "strain=DSM 21509", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/08/18", "asm_name": "ASM126955v1", "asm_submitter": "JLU", "gbrs_paired_asm": "GCA_001269555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/269/555/GCF_001269555.1_ASM126955v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7044612", "genome_size_ungapped": "7044612", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-12", "total_gene_count": "6409", "protein_coding_gene_count": "6262", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-08-18", "dateModified": "2015-08-18", "datePublished": "2015-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas chlororaphis subsp. piscium" ], "sample_taxid": [ "1513890" ], "sample_host_organism": [ "Perca fluviatilis L." ], "sample_host_organism_id": [], "sample_host_disease": [], 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"GCF_000397205.1", "gtdb_species": "s__Pseudomonas_E protegens", "ani": 86.6157, "matched_fragments": 1636, "total_fragments": 2329, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 76, "status": "-" }, { "accession": "GCF_003363755.1", "gtdb_species": "s__Pseudomonas_E protegens_A", "ani": 86.1604, "matched_fragments": 1595, "total_fragments": 2329, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.56", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 12, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.0, "doubling_h": -0.025, "growth_tmp": 27.333, "optimum_tmp": 27.667, "optimum_ph": 6.9, "genome_size": 6824747.081, "gc_content": 62.532, "coding_genes": 5951.364, "rRNA16S_genes": 5.0, "tRNA_genes": 68.625, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudomonas", "chlororaphis", "subsp.", "piscium" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }