{
    "type": "genome",
    "identifier": "GCF_001269905.1",
    "organism": "Pseudomonas corrugata",
    "title": "Pseudomonas corrugata",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JLU",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001269905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03891677",
        "wgs_master": "LHVK00000000.1",
        "refseq_category": "na",
        "taxid": "47879",
        "species_taxid": "47879",
        "organism_name": "Pseudomonas corrugata",
        "infraspecific_name": "strain=DSM 7228",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/08/18",
        "asm_name": "ASM126990v1",
        "asm_submitter": "JLU",
        "gbrs_paired_asm": "GCA_001269905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/269/905/GCF_001269905.1_ASM126990v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6126732",
        "genome_size_ungapped": "6126732",
        "gc_percent": "60.500000",
        "replicon_count": "0",
        "scaffold_count": "31",
        "contig_count": "31",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001269905.1-RS_2024_04_26",
        "annotation_date": "2024-04-26",
        "total_gene_count": "5400",
        "protein_coding_gene_count": "5243",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-08-18",
    "dateModified": "2015-08-18",
    "datePublished": "2015-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas corrugata"
        ],
        "sample_taxid": [
            "47879"
        ],
        "sample_host_organism": [
            "Solanum lycopersicum"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "1.716 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6126732",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "1211577",
        "N50 (bp)": "374457",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.6",
        "Number of CDSs": "5311",
        "Average Protein Length": "335.6",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "9",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pseudomonas corrugata",
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                "accession": "GCA_001269905.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "relation_to_type": "type",
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                "ani": 99.9685,
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudomonas mediterranea",
                "strain": "strain=CFBP 5447",
                "accession": "GCA_000774145.1",
                "taxid": 183795,
                "species_taxid": 183795,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas mediterranea",
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                "accession": "GCA_900106005.1",
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                "species_taxid": 183795,
                "relation_to_type": "type",
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                "ani": 92.8079,
                "matched_fragments": 1796,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas rhizophila",
                "strain": "strain=S211",
                "accession": "GCA_003033885.1",
                "taxid": 2045200,
                "species_taxid": 2045200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8341,
                "matched_fragments": 1538,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas pharyngis",
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                "accession": "GCA_021602345.1",
                "taxid": 2892333,
                "species_taxid": 2892333,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.772,
                "matched_fragments": 1234,
                "total_fragments": 2027,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sputi",
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                "accession": "GCA_021603585.1",
                "taxid": 2892325,
                "species_taxid": 2892325,
                "relation_to_type": "type",
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                "matched_fragments": 1236,
                "total_fragments": 2027,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas germanica",
                "strain": "strain=FIT28",
                "accession": "GCA_019614655.1",
                "taxid": 2815720,
                "species_taxid": 2815720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0229,
                "matched_fragments": 1206,
                "total_fragments": 2027,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas brassicae",
                "strain": "strain=MAFF 212427",
                "accession": "GCA_010671725.1",
                "taxid": 2708063,
                "species_taxid": 2708063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7535,
                "matched_fragments": 814,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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        "gtdb_result": [
            {
                "accession": "GCF_001269905.1",
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                "matched_fragments": 2025,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.98",
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                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_006227205.1",
                "gtdb_species": "s__Pseudomonas_E sp006227205",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014596565.1",
                "gtdb_species": "s__Pseudomonas_E sp000801235",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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                "num_clustered_genomes": 8,
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            },
            {
                "accession": "GCF_007828215.1",
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        ]
    },
    "_bac2feature": {
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        "coding_genes": 5214.0,
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        "range_salinity": 1.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "corrugata"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}