{ "type": "genome", "identifier": "GCF_001273775.1", "organism": "Nitrospira moscoviensis", "title": "Nitrospira moscoviensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Vienna", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001273775.1", "bioproject": "PRJNA224116", "biosample": "SAMN03702441", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "42253", "species_taxid": "42253", "organism_name": "Nitrospira moscoviensis", "infraspecific_name": "strain=NSP M-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/08/25", "asm_name": "ASM127377v1", "asm_submitter": "University of Vienna", "gbrs_paired_asm": "GCA_001273775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/273/775/GCF_001273775.1_ASM127377v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4589485", "genome_size_ungapped": "4589485", "gc_percent": "62.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001273775.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "4498", "protein_coding_gene_count": "4431", "non_coding_gene_count": "54", "pubmed_id": "26305944" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-08-25", "dateModified": "2015-08-25", "datePublished": "2015-08-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Nitrospira moscoviensis" ], "sample_taxid": [ "42253" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Moscow" ], "sample_host_location_id": [], "data_size": "1.285 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4589485", "Number of Sequences": "1", "Longest Sequences (bp)": "4589485", "N50 (bp)": "4589485", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "4492", "Average Protein Length": "301.5", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nitrospira moscoviensis", "strain": "strain=NSP M-1", "accession": "GCA_001273775.1", "taxid": 42253, "species_taxid": 42253, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1520, "total_fragments": 1529, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Myxococcus xanthus", "strain": "strain=DSM 16526", "accession": "GCA_900106535.1", "taxid": 34, "species_taxid": 34, "relation_to_type": "type", "validated": true, "ani": 75.4459, "matched_fragments": 56, "total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus vastator", "strain": "strain=AM301", "accession": "GCA_010894475.1", "taxid": 2709664, "species_taxid": 2709664, "relation_to_type": "type", "validated": true, "ani": 75.4094, "matched_fragments": 59, "total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus virescens", "strain": "strain=DSM 2260", "accession": "GCA_900101905.1", "taxid": 83456, "species_taxid": 83456, "relation_to_type": "type", "validated": true, "ani": 75.3541, "matched_fragments": 60, "total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": 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