{ "type": "genome", "identifier": "GCF_001280205.1", "organism": "Clavibacter capsici", "title": "Clavibacter capsici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001280205.1", "bioproject": "PRJNA224116", "biosample": "SAMN03896004", "wgs_master": "na", "refseq_category": "na", "taxid": "1874630", "species_taxid": "1874630", "organism_name": "Clavibacter capsici", "infraspecific_name": "strain=PF008", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/09/08", "asm_name": "ASM128020v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_001280205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/280/205/GCF_001280205.1_ASM128020v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3241713", "genome_size_ungapped": "3241713", "gc_percent": "73.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001280205.1-RS_2024_08_22", "annotation_date": "2024-08-22", "total_gene_count": "3137", "protein_coding_gene_count": "3049", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-09-08", "dateModified": "2015-09-08", "datePublished": "2015-09-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Clavibacter capsici" ], "sample_taxid": [ "1874630" ], "sample_host_organism": [ "pepper" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.845 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3241713", "Number of Sequences": "3", "Longest Sequences (bp)": "3056296", "N50 (bp)": "3056296", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "3136", "Average Protein Length": "313.2", "Coding Ratio (%)": "90.9", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clavibacter phaseoli", "strain": "strain=LPPA 982", "accession": "GCA_021922925.1", "taxid": 1734031, "species_taxid": 1734031, "relation_to_type": "type", "validated": true, "ani": 92.0312, "matched_fragments": 911, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { 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"Clavibacter michiganensis subsp. insidiosus", "strain": "strain=LMG 3663", "accession": "GCA_002240565.1", "taxid": 33014, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 91.6264, "matched_fragments": 928, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=VKM Ac-1403", "accession": "GCA_900168345.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 91.5761, "matched_fragments": 930, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. michiganensis", "strain": "strain=LMG 7333", "accession": "GCA_002240575.1", "taxid": 33013, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 91.5674, "matched_fragments": 935, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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