{ "type": "genome", "identifier": "GCF_001280255.1", "organism": "Thermus aquaticus", "title": "Thermus aquaticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gdansk", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001280255.1", "bioproject": "PRJNA224116", "biosample": "SAMN03951125", "wgs_master": "LHCI00000000.1", "refseq_category": "na", "taxid": "271", "species_taxid": "271", "organism_name": "Thermus aquaticus", "infraspecific_name": "strain=YT-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/09/08", "asm_name": "ASM128025v1", "asm_submitter": "University of Gdansk", "gbrs_paired_asm": "GCA_001280255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/280/255/GCF_001280255.1_ASM128025v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2248795", "genome_size_ungapped": "2216193", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "108", "contig_count": "108", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001280255.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2526", "protein_coding_gene_count": "2319", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-09-08", "dateModified": "2015-09-08", "datePublished": "2015-09-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus aquaticus" ], "sample_taxid": [ "271" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Wyoming, Yellowstone National Park" ], "sample_host_location_id": [], "data_size": "0.589 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2248795", "Number of Sequences": "108", "Longest Sequences (bp)": "2072904", "N50 (bp)": "2072904", "Gap Ratio (%)": "1.449754", "GCcontent (%)": "68.1", "Number of CDSs": "2329", "Average Protein Length": "289.0", "Coding Ratio (%)": "89.8", "Number of rRNAs": "6", "Number of tRNAs": "56", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus aquaticus", "strain": "strain=YT-1", "accession": "GCA_001280255.1", "taxid": 271, "species_taxid": 271, "relation_to_type": "type", "validated": true, "ani": 99.9998, "matched_fragments": 722, "total_fragments": 728, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermus sediminis", "strain": "strain=L198", "accession": "GCA_003426945.1", "taxid": 1761908, "species_taxid": 1761908, "relation_to_type": "type", "validated": true, "ani": 88.4898, "matched_fragments": 593, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=CGMCC 1.6992", "accession": "GCA_900102145.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 87.1205, "matched_fragments": 574, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=JCM 15153", "accession": "GCA_022556335.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 87.0062, "matched_fragments": 573, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus igniterrae", "strain": "strain=ATCC 700962", "accession": 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