{
    "type": "genome",
    "identifier": "GCF_001280595.1",
    "organism": "Paenibacillus xylanivorans",
    "title": "Paenibacillus xylanivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INTA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001280595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04005808",
        "wgs_master": "LITU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1705561",
        "species_taxid": "1705561",
        "organism_name": "Paenibacillus xylanivorans",
        "infraspecific_name": "strain=A59",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/09/09",
        "asm_name": "ASM128059v1",
        "asm_submitter": "INTA",
        "gbrs_paired_asm": "GCA_001280595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/280/595/GCF_001280595.1_ASM128059v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7087286",
        "genome_size_ungapped": "7077420",
        "gc_percent": "46.000000",
        "replicon_count": "0",
        "scaffold_count": "83",
        "contig_count": "83",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001280595.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "6519",
        "protein_coding_gene_count": "6270",
        "non_coding_gene_count": "52",
        "pubmed_id": "26494679"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-09-09",
    "dateModified": "2015-09-09",
    "datePublished": "2015-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus xylanivorans"
        ],
        "sample_taxid": [
            "1705561"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Argentina: Neuquen Province"
        ],
        "sample_host_location_id": [],
        "data_size": "2.028 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 22.0,
            "max": 22.0
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7087286",
        "Number of Sequences": "83",
        "Longest Sequences (bp)": "626173",
        "N50 (bp)": "317089",
        "Gap Ratio (%)": "0.139207",
        "GCcontent (%)": "46.1",
        "Number of CDSs": "6432",
        "Average Protein Length": "310.1",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus xylanivorans",
                "strain": "strain=A59",
                "accession": "GCA_001280595.1",
                "taxid": 1705561,
                "species_taxid": 1705561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2331,
                "total_fragments": 2332,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus taichungensis",
                "strain": "strain=DSM 19942",
                "accession": "GCA_013359905.1",
                "taxid": 484184,
                "species_taxid": 484184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9783,
                "matched_fragments": 1976,
                "total_fragments": 2332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus pabuli",
                "strain": "strain=NBRC 13638",
                "accession": "GCA_001514495.1",
                "taxid": 1472,
                "species_taxid": 1472,
                "relation_to_type": "suspected-type",
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                "ani": 88.8519,
                "matched_fragments": 1817,
                "total_fragments": 2332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanexedens",
                "strain": "strain=DSM 21292",
                "accession": "GCA_017874615.1",
                "taxid": 528191,
                "species_taxid": 528191,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.5042,
                "matched_fragments": 1431,
                "total_fragments": 2332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus amylolyticus",
                "strain": "strain=NBRC 15957",
                "accession": "GCA_004001025.1",
                "taxid": 1451,
                "species_taxid": 1451,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.4927,
                "matched_fragments": 1447,
                "total_fragments": 2332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanilyticus",
                "strain": "strain=LMG 21957",
                "accession": "GCA_013359935.1",
                "taxid": 248903,
                "species_taxid": 248903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0518,
                "matched_fragments": 1397,
                "total_fragments": 2332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus caui",
                "strain": "strain=81-11",
                "accession": "GCA_019904135.1",
                "taxid": 2873927,
                "species_taxid": 2873927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9468,
                "matched_fragments": 105,
                "total_fragments": 2332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus timonensis",
                "strain": "strain=DSM 16943",
                "accession": "GCA_022427145.1",
                "taxid": 225915,
                "species_taxid": 225915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7145,
                "matched_fragments": 105,
                "total_fragments": 2332,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001280595.1",
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                "ani": 100.0,
                "matched_fragments": 2331,
                "total_fragments": 2332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000499205.1",
                "gtdb_species": "s__Paenibacillus sp000499205",
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                "total_fragments": 2332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.89",
                "min_intra_species_ani": "98.31",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_013359905.1",
                "gtdb_species": "s__Paenibacillus taichungensis",
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                "matched_fragments": 1976,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900109515.1",
                "gtdb_species": "s__Paenibacillus sp900109515",
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                "matched_fragments": 1784,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCF_003287275.1",
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                "matched_fragments": 1980,
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_013401555.1",
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                "num_clustered_genomes": 5,
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_017874615.1",
                "gtdb_species": "s__Paenibacillus xylanexedens",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
        "doubling_h": 0.565,
        "growth_tmp": 30.106,
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        "genome_size": 6197949.921,
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        "coding_genes": 5381.029,
        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
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        "mesophilic_range_tmp": 0.9,
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        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Paenibacillus",
        "xylanivorans"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}