{ "type": "genome", "identifier": "GCF_001281405.1", "organism": "Bartonella ancashensis", "title": "Bartonella ancashensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Walter Reed Army Institute of Research", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001281405.1", "bioproject": "PRJNA224116", "biosample": "SAMN02803869", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1318743", "species_taxid": "1318743", "organism_name": "Bartonella ancashensis", "infraspecific_name": "strain=20.00", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/09/14", "asm_name": "ASM128140v1", "asm_submitter": "Walter Reed Army Institute of Research", "gbrs_paired_asm": "GCA_001281405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/281/405/GCF_001281405.1_ASM128140v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1467695", "genome_size_ungapped": "1467695", "gc_percent": "38.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "1290", "protein_coding_gene_count": "1198", "non_coding_gene_count": "52", "pubmed_id": "26543106" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-09-14", "dateModified": "2015-09-14", "datePublished": "2015-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella ancashensis" ], "sample_taxid": [ "1318743" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "verruca" ], "sample_host_disease_id": [], "sample_host_location": [ "Peru: Caraz" ], "sample_host_location_id": [], "data_size": "0.413 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1467695", "Number of Sequences": "1", "Longest Sequences (bp)": "1467695", "N50 (bp)": "1467695", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.4", "Number of CDSs": "1254", "Average Protein Length": "316.9", "Coding Ratio (%)": "81.2", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella ancashensis", "strain": "strain=20.00", "accession": "GCA_001281405.1", "taxid": 1318743, "species_taxid": 1318743, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 488, "total_fragments": 489, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella bacilliformis", "strain": "strain=KC583; ATCC 35685", "accession": "GCA_000015445.1", "taxid": 774, "species_taxid": 774, "relation_to_type": "type", "validated": true, "ani": 79.0196, "matched_fragments": 277, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella bovis", "strain": "strain=91-4", "accession": "GCA_000384965.1", "taxid": 155194, "species_taxid": 155194, "relation_to_type": "type", "validated": true, "ani": 78.3642, "matched_fragments": 233, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella schoenbuchensis", "strain": "strain=R1", "accession": "GCA_002022685.1", "taxid": 165694, "species_taxid": 165694, "relation_to_type": "type", "validated": true, "ani": 78.3318, "matched_fragments": 246, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella capreoli", "strain": "strain=DSM 21569", "accession": "GCA_902813205.1", "taxid": 155192, "species_taxid": 155192, "relation_to_type": "type", "validated": true, "ani": 78.2715, "matched_fragments": 232, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella schoenbuchensis", "strain": "strain=CCUG 50783", "accession": "GCA_902810545.1", "taxid": 165694, "species_taxid": 165694, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1936, "matched_fragments": 237, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC 12862", "accession": "GCA_000278155.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 78.1393, "matched_fragments": 192, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella bovis", "strain": "strain=CIP 106692", "accession": "GCA_902728095.1", "taxid": 155194, "species_taxid": 155194, "relation_to_type": "type", "validated": true, "ani": 78.1194, "matched_fragments": 233, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC12862", "accession": "GCA_900445535.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 78.0322, "matched_fragments": 196, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella clarridgeiae", "strain": "strain=ATCC 51734", "accession": "GCA_000518185.1", "taxid": 56426, "species_taxid": 56426, "relation_to_type": "type", "validated": true, "ani": 78.0195, "matched_fragments": 207, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella birtlesii", "strain": "strain=IBS 325", "accession": "GCA_000273375.1", "taxid": 111504, "species_taxid": 111504, "relation_to_type": "type", "validated": true, "ani": 77.9906, "matched_fragments": 189, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=ATCC 700133", "accession": "GCA_000526895.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 77.985, "matched_fragments": 191, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella harrusi", "strain": "strain=117A", "accession": "GCA_024297065.1", "taxid": 2961895, "species_taxid": 2961895, "relation_to_type": "type", "validated": true, "ani": 77.741, "matched_fragments": 178, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella krasnovii", "strain": "strain=OE 1-1", "accession": "GCA_003606345.3", "taxid": 2267275, "species_taxid": 2267275, "relation_to_type": "type", "validated": true, "ani": 77.6692, "matched_fragments": 189, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella florencae", "strain": "strain=R4", "accession": "GCA_000312525.1", "taxid": 928210, "species_taxid": 928210, "relation_to_type": "type", "validated": true, "ani": 77.5937, "matched_fragments": 187, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella gabonensis", "strain": "strain=669", "accession": "GCA_903679515.1", "taxid": 2699889, "species_taxid": 2699889, "relation_to_type": "type", "validated": true, "ani": 77.5841, "matched_fragments": 175, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-1", "accession": "GCA_000046705.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 77.579, "matched_fragments": 207, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella saheliensis", "strain": "strain=077", "accession": "GCA_902162175.1", "taxid": 1457016, "species_taxid": 1457016, "relation_to_type": "type", "validated": true, "ani": 77.4374, "matched_fragments": 161, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella fuyuanensis", "strain": "strain=DSM 100694", "accession": "GCA_014197255.1", "taxid": 1460968, "species_taxid": 1460968, "relation_to_type": "type", "validated": true, "ani": 77.3647, "matched_fragments": 180, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001281405.1", "gtdb_species": "s__Bartonella ancashensis", "ani": 100.0, "matched_fragments": 487, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000709795.1", "gtdb_species": "s__Bartonella bacilliformis_A", "ani": 79.0922, "matched_fragments": 250, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000015445.1", "gtdb_species": "s__Bartonella bacilliformis", "ani": 78.9697, "matched_fragments": 277, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.04", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.96", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_002022415.1", "gtdb_species": "s__Bartonella sp002022415", "ani": 78.4005, "matched_fragments": 229, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002022685.1", "gtdb_species": "s__Bartonella schoenbuchensis", "ani": 78.3984, "matched_fragments": 247, "total_fragments": 489, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bartonella", "ancashensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }