{
    "type": "genome",
    "identifier": "GCF_001283065.1",
    "organism": "Helicobacter heilmannii",
    "title": "Helicobacter heilmannii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UGENT",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001283065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3174163",
        "wgs_master": "CDMK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "35817",
        "species_taxid": "35817",
        "organism_name": "Helicobacter heilmannii",
        "infraspecific_name": "na",
        "isolate": "ASB1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/08/17",
        "asm_name": "Hheil",
        "asm_submitter": "UGENT",
        "gbrs_paired_asm": "GCA_001283065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/283/065/GCF_001283065.1_Hheil",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1638988",
        "genome_size_ungapped": "1621662",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001283065.1-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "1637",
        "protein_coding_gene_count": "1548",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-08-17",
    "dateModified": "2015-08-17",
    "datePublished": "2015-08-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Helicobacter heilmannii"
        ],
        "sample_taxid": [
            "35817"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.456 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1638988",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "840140",
        "N50 (bp)": "840140",
        "Gap Ratio (%)": "1.057543",
        "GCcontent (%)": "47.7",
        "Number of CDSs": "1592",
        "Average Protein Length": "302.7",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Helicobacter heilmannii",
                "strain": "",
                "accession": "GCA_001283065.1",
                "taxid": 35817,
                "species_taxid": 35817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9998,
                "matched_fragments": 543,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Helicobacter heilmannii",
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                "species_taxid": 35817,
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                "validated": true,
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                "matched_fragments": 474,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Helicobacter ailurogastricus",
                "strain": "",
                "accession": "GCA_001282945.1",
                "taxid": 1578720,
                "species_taxid": 1578720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7436,
                "matched_fragments": 424,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter mehlei",
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                "accession": "GCA_003660265.1",
                "taxid": 2316080,
                "species_taxid": 2316080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6475,
                "matched_fragments": 199,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter vulpis",
                "strain": "strain=L2",
                "accession": "GCA_003660395.1",
                "taxid": 2316076,
                "species_taxid": 2316076,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3095,
                "matched_fragments": 159,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter bizzozeronii",
                "strain": "strain=CIP 105233",
                "accession": "GCA_017979515.1",
                "taxid": 56877,
                "species_taxid": 56877,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2413,
                "matched_fragments": 200,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter labacensis",
                "strain": "strain=L9",
                "accession": "GCA_003660285.1",
                "taxid": 2316079,
                "species_taxid": 2316079,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8444,
                "matched_fragments": 178,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter suis",
                "strain": "strain=DSM 19735",
                "accession": "GCA_017979375.1",
                "taxid": 104628,
                "species_taxid": 104628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3494,
                "matched_fragments": 99,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter suis",
                "strain": "strain=HS1",
                "accession": "GCA_000187625.2",
                "taxid": 104628,
                "species_taxid": 104628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2971,
                "matched_fragments": 100,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001283065.1",
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                "matched_fragments": 543,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.97",
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                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001282945.1",
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                "matched_fragments": 423,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003660265.1",
                "gtdb_species": "s__Helicobacter_E mehlei",
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                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.56",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000263275.1",
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                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.96",
                "min_intra_species_ani": "95.19",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_003660395.1",
                "gtdb_species": "s__Helicobacter_E vulpis",
                "ani": 78.3097,
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000200595.1",
                "gtdb_species": "s__Helicobacter_E felis",
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                "matched_fragments": 152,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
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            },
            {
                "accession": "GCF_003660285.1",
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            },
            {
                "accession": "GCF_902196125.1",
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            },
            {
                "accession": "GCF_000187625.1",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
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                "num_clustered_genomes": 4,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
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        "growth_tmp": 37.0,
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        "rRNA16S_genes": 1.895,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Helicobacter",
        "heilmannii"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}