{
    "type": "genome",
    "identifier": "GCF_001293165.1",
    "organism": "Candidatus Thioglobus autotrophicus",
    "title": "Candidatus Thioglobus autotrophicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Washington",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001293165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03280981",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1705394",
        "species_taxid": "1705394",
        "organism_name": "Candidatus Thioglobus autotrophicus",
        "infraspecific_name": "strain=EF1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/09/17",
        "asm_name": "ASM129316v1",
        "asm_submitter": "University of Washington",
        "gbrs_paired_asm": "GCA_001293165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/293/165/GCF_001293165.1_ASM129316v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1512449",
        "genome_size_ungapped": "1512449",
        "gc_percent": "39.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "1657",
        "protein_coding_gene_count": "1610",
        "non_coding_gene_count": "42",
        "pubmed_id": "27434424;26494660"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-09-17",
    "dateModified": "2015-09-17",
    "datePublished": "2015-09-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Thioglobus autotrophicus"
        ],
        "sample_taxid": [
            "1705394"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver Islands"
        ],
        "sample_host_location_id": [],
        "data_size": "0.425 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1512449",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1512449",
        "N50 (bp)": "1512449",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.1",
        "Number of CDSs": "1605",
        "Average Protein Length": "292.6",
        "Coding Ratio (%)": "93.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Candidatus Thioglobus autotrophicus",
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                "accession": "GCA_001293165.1",
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                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 504,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "total_fragments": 504,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
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                "mean_intra_species_ani": "99.87",
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                "num_clustered_genomes": 3,
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            },
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                "matched_fragments": 247,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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            },
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                "accession": "GCA_003978185.1",
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
        "cell_length": null,
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        "optimum_ph": null,
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        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
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        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
        "Candidatus",
        "Thioglobus",
        "autotrophicus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}