{ "type": "genome", "identifier": "GCF_001294205.1", "organism": "Amantichitinum ursilacus", "title": "Amantichitinum ursilacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fraunhofer", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001294205.1", "bioproject": "PRJNA224116", "biosample": "SAMN03443696", "wgs_master": "LAQT00000000.1", "refseq_category": "reference genome", "taxid": "857265", "species_taxid": "857265", "organism_name": "Amantichitinum ursilacus", "infraspecific_name": "strain=IGB-41", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/09/18", "asm_name": "ASM129420v1", "asm_submitter": "Fraunhofer", "gbrs_paired_asm": "GCA_001294205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/294/205/GCF_001294205.1_ASM129420v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4928951", "genome_size_ungapped": "4928951", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001294205.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4430", "protein_coding_gene_count": "4349", "non_coding_gene_count": "60", "pubmed_id": "26586877" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-09-18", "dateModified": "2015-09-18", "datePublished": "2015-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Amantichitinum ursilacus" ], "sample_taxid": [ "857265" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Stuttgart near lake Baerensee" ], "sample_host_location_id": [], "data_size": "1.371 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 18.0, "max": 18.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4928951", "Number of Sequences": "38", "Longest Sequences (bp)": "568633", "N50 (bp)": "323782", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.1", "Number of CDSs": "4406", "Average Protein Length": "326.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Silvimonas iriomotensis", "strain": "strain=CGMCC 1.8859", "accession": "GCA_014645535.1", "taxid": 449662, "species_taxid": 449662, "relation_to_type": "type", "validated": true, "ani": 79.5345, "matched_fragments": 649, 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"below_threshold" }, { "organism_name": "Jeongeupia naejangsanensis", "strain": "strain=DSM 24253", "accession": "GCA_016865585.1", "taxid": 613195, "species_taxid": 613195, "relation_to_type": "type", "validated": true, "ani": 77.9403, "matched_fragments": 274, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Andreprevotia chitinilytica", "strain": "strain=DSM 18519", "accession": "GCA_000711875.1", "taxid": 396808, "species_taxid": 396808, "relation_to_type": "type", "validated": true, "ani": 77.8333, "matched_fragments": 363, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitiniphilus shinanonensis", "strain": "strain=DSM 23277", "accession": "GCA_000374805.1", "taxid": 553088, "species_taxid": 553088, "relation_to_type": "type", "validated": true, "ani": 77.7976, "matched_fragments": 398, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formivibrio citricus", "strain": "strain=DSM 6150", "accession": "GCA_900115065.1", "taxid": 83765, "species_taxid": 83765, "relation_to_type": "type", "validated": true, "ani": 77.2832, "matched_fragments": 180, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinilyticum litopenaei", "strain": "strain=DSM 21440", "accession": "GCA_000428145.1", "taxid": 1121276, "species_taxid": 1121276, "relation_to_type": "type", "validated": true, "ani": 77.219, "matched_fragments": 282, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinilyticum aquatile", "strain": "strain=DSM 21506", "accession": "GCA_000430805.1", "taxid": 362520, "species_taxid": 362520, "relation_to_type": "type", "validated": true, "ani": 77.1233, "matched_fragments": 239, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquitalea aquatilis", "strain": "strain=THG-DN7.12", 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