{ "type": "genome", "identifier": "GCF_001294335.1", "organism": "Streptomyces chattanoogensis", "title": "Streptomyces chattanoogensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois at Urbana-Champaign", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001294335.1", "bioproject": "PRJNA224116", "biosample": "SAMN03327492", "wgs_master": "LGKG00000000.1", "refseq_category": "reference genome", "taxid": "66876", "species_taxid": "66876", "organism_name": "Streptomyces chattanoogensis", "infraspecific_name": "strain=NRRL ISP-5002", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/09/18", "asm_name": "ASM129433v1", "asm_submitter": "University of Illinois at Urbana-Champaign", "gbrs_paired_asm": "GCA_001294335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/294/335/GCF_001294335.1_ASM129433v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9129105", "genome_size_ungapped": "9129105", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "217", "contig_count": "217", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001294335.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "8319", "protein_coding_gene_count": "7912", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-09-18", "dateModified": "2015-09-18", "datePublished": "2015-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces chattanoogensis" ], "sample_taxid": [ "66876" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Tennessee" ], "sample_host_location_id": [], "data_size": "2.478 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9129105", "Number of Sequences": "217", "Longest Sequences (bp)": "749976", "N50 (bp)": "166063", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "8263", "Average Protein Length": "311.8", "Coding Ratio (%)": "84.7", "Number of rRNAs": "3", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces chattanoogensis", "strain": "strain=NRRL ISP-5002", "accession": "GCA_001294335.1", "taxid": 66876, "species_taxid": 66876, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2956, "total_fragments": 2969, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces inhibens", "strain": "strain=NEAU-D10", "accession": "GCA_003389455.1", "taxid": 2293571, "species_taxid": 2293571, "relation_to_type": "type", "validated": true, "ani": 87.294, "matched_fragments": 1874, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces piniterrae", "strain": "strain=jys28", "accession": "GCA_005048155.1", "taxid": 2571125, "species_taxid": 2571125, "relation_to_type": "type", "validated": true, "ani": 86.787, "matched_fragments": 2002, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sioyaensis", "strain": "strain=DSM 40032", "accession": "GCA_004122735.1", "taxid": 67364, "species_taxid": 67364, "relation_to_type": "type", "validated": true, "ani": 86.5583, "matched_fragments": 1697, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=JCM 4053", "accession": "GCA_019933235.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 86.5195, "matched_fragments": 1823, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicamycinicus", "strain": "strain=NBRC 110027", "accession": "GCA_000829715.2", "taxid": 1546107, "species_taxid": 1546107, "relation_to_type": "type", "validated": true, "ani": 86.5064, "matched_fragments": 1915, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NBRC 3934", "accession": "GCA_009176265.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 86.4781, "matched_fragments": 1839, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NRRL B-2347", "accession": "GCA_002154415.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 86.478, "matched_fragments": 1427, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicus", "strain": "strain=NRRL ISP-5461", "accession": "GCA_000717345.1", "taxid": 47763, "species_taxid": 47763, "relation_to_type": "suspected-type", "validated": true, "ani": 86.4601, "matched_fragments": 1902, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicus", "strain": "strain=ATCC 25470", "accession": "GCA_004125245.1", "taxid": 47763, "species_taxid": 47763, "relation_to_type": "suspected-type", "validated": true, "ani": 86.4304, "matched_fragments": 1890, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tubercidicus", "strain": "strain=NBRC 13090", "accession": "GCA_009811635.1", "taxid": 47759, "species_taxid": 47759, "relation_to_type": "type", "validated": true, "ani": 86.3498, "matched_fragments": 1780, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kronopolitis", "strain": "strain=CGMCC 4.7323", "accession": "GCA_014646275.1", "taxid": 1612435, "species_taxid": 1612435, "relation_to_type": "type", "validated": true, "ani": 86.2268, "matched_fragments": 1693, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albospinus", "strain": "strain=JCM 3399", "accession": "GCA_014648695.1", "taxid": 285515, "species_taxid": 285515, "relation_to_type": "type", "validated": true, "ani": 86.0004, "matched_fragments": 1872, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kasugaensis", "strain": "strain=BCRC 12349", "accession": "GCA_002261115.1", "taxid": 1946, "species_taxid": 1946, "relation_to_type": "type", "validated": true, "ani": 85.596, "matched_fragments": 1709, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pinistramenti", "strain": "strain=SF28", "accession": "GCA_020564935.1", "taxid": 2884812, "species_taxid": 2884812, "relation_to_type": "type", "validated": true, "ani": 85.1202, "matched_fragments": 1604, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces benahoarensis", "strain": "strain=MZ03-37", "accession": "GCA_007280575.1", "taxid": 2595054, "species_taxid": 2595054, "relation_to_type": "type", "validated": true, "ani": 84.0277, "matched_fragments": 1283, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 83.5897, "matched_fragments": 1666, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces paromomycinus", "strain": "strain=NBRC 15454", "accession": "GCA_003865155.1", "taxid": 92743, "species_taxid": 92743, "relation_to_type": "type", "validated": true, "ani": 83.5192, "matched_fragments": 1667, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 83.419, "matched_fragments": 1621, "total_fragments": 2969, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001294335.1", "gtdb_species": "s__Streptomyces chattanoogensis", "ani": 100.0, "matched_fragments": 2956, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.46", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002082195.1", "gtdb_species": "s__Streptomyces gilvosporeus", "ani": 89.0289, "matched_fragments": 2048, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0251, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000935125.1", "gtdb_species": "s__Streptomyces natalensis", "ani": 89.0125, "matched_fragments": 1989, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0251, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003389455.1", "gtdb_species": "s__Streptomyces inhibens", "ani": 87.2971, "matched_fragments": 1874, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005048155.1", "gtdb_species": "s__Streptomyces piniterrae", "ani": 86.7849, "matched_fragments": 2003, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009811595.1", "gtdb_species": "s__Streptomyces libani", "ani": 86.6717, "matched_fragments": 1988, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.04", "min_intra_species_ani": "96.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_001270575.1", "gtdb_species": "s__Streptomyces decoyicus", "ani": 86.5308, "matched_fragments": 1841, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.25", "min_intra_species_ani": "96.25", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004122735.1", "gtdb_species": "s__Streptomyces sioyaensis", "ani": 86.5262, "matched_fragments": 1702, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_009176265.1", "gtdb_species": "s__Streptomyces angustmyceticus", "ani": 86.4746, "matched_fragments": 1837, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009811635.1", "gtdb_species": "s__Streptomyces tubercidicus", "ani": 86.3448, "matched_fragments": 1781, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900187385.1", "gtdb_species": "s__Streptomyces sp900187385", "ani": 86.3027, "matched_fragments": 1815, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_004125265.1", "gtdb_species": "s__Streptomyces lydicus_C", "ani": 86.159, "matched_fragments": 1836, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000720995.1", "gtdb_species": "s__Streptomyces celluloflavus", "ani": 85.6977, "matched_fragments": 1673, "total_fragments": 2969, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.24", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 9129100.0, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "chattanoogensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }