{
    "type": "genome",
    "identifier": "GCF_001295365.1",
    "organism": "Parageobacillus thermoglucosidasius",
    "title": "Parageobacillus thermoglucosidasius",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Microbiology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001295365.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04099008",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1426",
        "species_taxid": "1426",
        "organism_name": "Parageobacillus thermoglucosidasius",
        "infraspecific_name": "strain=DSM 2542",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/09/22",
        "asm_name": "ASM129536v1",
        "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_001295365.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/295/365/GCF_001295365.1_ASM129536v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3873116",
        "genome_size_ungapped": "3873116",
        "gc_percent": "44.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001295365.1-RS_2024_05_13",
        "annotation_date": "2024-05-13",
        "total_gene_count": "3892",
        "protein_coding_gene_count": "3641",
        "non_coding_gene_count": "122",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-09-22",
    "dateModified": "2015-09-22",
    "datePublished": "2015-09-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parageobacillus thermoglucosidasius"
        ],
        "sample_taxid": [
            "1426"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.088 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3873116",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3873116",
        "N50 (bp)": "3873116",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.9",
        "Number of CDSs": "3776",
        "Average Protein Length": "285.8",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "27",
        "Number of tRNAs": "90",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parageobacillus thermoglucosidasius",
                "strain": "strain=DSM 2542",
                "accession": "GCA_001295365.1",
                "taxid": 1426,
                "species_taxid": 1426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1291,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parageobacillus thermoglucosidasius",
                "strain": "strain=NCIMB 11955",
                "accession": "GCA_001700985.1",
                "taxid": 1426,
                "species_taxid": 1426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9973,
                "matched_fragments": 1289,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parageobacillus thermoglucosidasius",
                "strain": "strain=DSM 2542",
                "accession": "GCA_000966225.1",
                "taxid": 1426,
                "species_taxid": 1426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9535,
                "matched_fragments": 1232,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parageobacillus thermoglucosidasius",
                "strain": "strain=NBRC 107763",
                "accession": "GCA_000648295.1",
                "taxid": 1426,
                "species_taxid": 1426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9528,
                "matched_fragments": 1222,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parageobacillus thermantarcticus",
                "strain": "strain=M1",
                "accession": "GCA_900111865.1",
                "taxid": 186116,
                "species_taxid": 186116,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.007,
                "matched_fragments": 873,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parageobacillus caldoxylosilyticus",
                "strain": "strain=NBRC 107762",
                "accession": "GCA_000632715.1",
                "taxid": 81408,
                "species_taxid": 81408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4042,
                "matched_fragments": 809,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001295365.1",
                "gtdb_species": "s__Parageobacillus thermoglucosidasius",
                "ani": 100.0,
                "matched_fragments": 1291,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Parageobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001655645.1",
                "gtdb_species": "s__Parageobacillus thermoglucosidasius_A",
                "ani": 91.0421,
                "matched_fragments": 1037,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Parageobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111865.1",
                "gtdb_species": "s__Parageobacillus thermantarcticus",
                "ani": 90.0255,
                "matched_fragments": 872,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Parageobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003688615.2",
                "gtdb_species": "s__Parageobacillus toebii",
                "ani": 85.4325,
                "matched_fragments": 859,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Parageobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_000632715.1",
                "gtdb_species": "s__Saccharococcus caldoxylosilyticus",
                "ani": 83.3855,
                "matched_fragments": 811,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Saccharococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.78",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000632515.1",
                "gtdb_species": "s__Saccharococcus sp000632515",
                "ani": 83.1325,
                "matched_fragments": 825,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Saccharococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011761475.1",
                "gtdb_species": "s__Saccharococcus thermophilus",
                "ani": 83.0517,
                "matched_fragments": 730,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Saccharococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009183655.1",
                "gtdb_species": "s__Pseudobacillus aerolatus",
                "ani": 76.6115,
                "matched_fragments": 68,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Pseudobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.433,
        "doubling_h": 0.301,
        "growth_tmp": 57.75,
        "optimum_tmp": 62.166,
        "optimum_ph": null,
        "genome_size": 3612433.222,
        "gc_content": 43.176,
        "coding_genes": 3674.286,
        "rRNA16S_genes": 10.0,
        "tRNA_genes": 90.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.25,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.75,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Parageobacillus",
        "thermoglucosidasius"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}