{ "type": "genome", "identifier": "GCF_001299075.1", "organism": "Enterobacter cloacae", "title": "Enterobacter cloacae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001299075.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2247599", "wgs_master": "CYTA00000000.1", "refseq_category": "na", "taxid": "550", "species_taxid": "550", "organism_name": "Enterobacter cloacae", "infraspecific_name": "strain=ATCC 13047", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/09/19", "asm_name": "11861_6#26", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_001299075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/299/075/GCF_001299075.1_11861_6_26", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5457476", "genome_size_ungapped": "5453283", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "110", "contig_count": "110", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001299075.1-RS_2024_10_16", "annotation_date": "2024-10-16", "total_gene_count": "5428", "protein_coding_gene_count": "5224", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-09-19", "dateModified": "2015-09-19", "datePublished": "2015-09-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter cloacae" ], "sample_taxid": [ "550" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.553 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5457476", "Number of Sequences": "110", "Longest Sequences (bp)": "319613", "N50 (bp)": "111023", "Gap Ratio (%)": "0.076959", "GCcontent (%)": "54.6", "Number of CDSs": "5258", "Average Protein Length": "304.6", "Coding Ratio (%)": "88.0", "Number of rRNAs": "5", "Number of tRNAs": "70", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_013376815.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.9908, "matched_fragments": 1764, "total_fragments": 1765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=FDAARGOS 1431", "accession": "GCA_019047105.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.9905, "matched_fragments": 1763, "total_fragments": 1765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000755525.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.9894, "matched_fragments": 1763, "total_fragments": 1765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae subsp. cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000025565.1", "taxid": 336306, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.9878, "matched_fragments": 1764, "total_fragments": 1765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000025565.1", "gtdb_species": "s__Enterobacter cloacae", "ani": 99.9878, "matched_fragments": 1764, "total_fragments": 1765, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "95.14", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.80", "num_clustered_genomes": 129, "status": "conclusive" }, { "accession": "GCF_002939185.1", "gtdb_species": "s__Enterobacter sichuanensis", "ani": 89.2413, "matched_fragments": 1302, "total_fragments": 1765, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, 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