{ "type": "genome", "identifier": "GCF_001302265.1", "organism": "Streptococcus phocae", "title": "Streptococcus phocae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Andres Bello", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001302265.1", "bioproject": "PRJNA224116", "biosample": "SAMN03955537", "wgs_master": "LHQM00000000.1", "refseq_category": "reference genome", "taxid": "119224", "species_taxid": "119224", "organism_name": "Streptococcus phocae", "infraspecific_name": "strain=ATCC 51973", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/09/28", "asm_name": "ASM130226v1", "asm_submitter": "Universidad Andres Bello", "gbrs_paired_asm": "GCA_001302265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/302/265/GCF_001302265.1_ASM130226v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1700082", "genome_size_ungapped": "1700082", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "91", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001302265.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "1765", "protein_coding_gene_count": "1651", "non_coding_gene_count": "45", "pubmed_id": "26586875" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-09-28", "dateModified": "2015-09-28", "datePublished": "2015-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus phocae" ], "sample_taxid": [ "119224" ], "sample_host_organism": [ "seal" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.486 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1700082", "Number of Sequences": "91", "Longest Sequences (bp)": "240592", "N50 (bp)": "63803", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.5", "Number of CDSs": "1668", "Average Protein Length": "290.6", "Coding Ratio (%)": "85.5", "Number of rRNAs": "2", "Number of tRNAs": "35", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus phocae", "strain": "strain=ATCC 51973", "accession": "GCA_001302265.1", "taxid": 119224, "species_taxid": 119224, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 528, "total_fragments": 531, "ani_threshold": 95, "status": 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