{ "type": "genome", "identifier": "GCF_001302565.1", "organism": "Glutamicibacter halophytocola", "title": "Glutamicibacter halophytocola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001302565.1", "bioproject": "PRJNA224116", "biosample": "SAMN03840760", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1933880", "species_taxid": "1933880", "organism_name": "Glutamicibacter halophytocola", "infraspecific_name": "strain=KLBMP 5180", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/09/29", "asm_name": "ASM130256v1", "asm_submitter": "Jiangsu Normal University", "gbrs_paired_asm": "GCA_001302565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/302/565/GCF_001302565.1_ASM130256v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3918424", "genome_size_ungapped": "3918424", "gc_percent": "60.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3658", "protein_coding_gene_count": "3555", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-09-29", "dateModified": "2015-09-29", "datePublished": "2015-09-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Glutamicibacter halophytocola" ], "sample_taxid": [ "1933880" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiangsu" ], "sample_host_location_id": [], "data_size": "1.101 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3918424", "Number of Sequences": "2", "Longest Sequences (bp)": "3911798", "N50 (bp)": "3911798", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.0", "Number of CDSs": "3639", "Average Protein Length": "312.7", "Coding Ratio (%)": "87.1", "Number of rRNAs": "19", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Glutamicibacter halophytocola", "strain": "strain=KLBMP 5180", "accession": "GCA_001302565.1", "taxid": 1933880, "species_taxid": 1933880, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1303, "total_fragments": 1305, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Glutamicibacter mishrai", "strain": "strain=S5-52", "accession": "GCA_012221945.1", "taxid": 1775880, "species_taxid": 1775880, "relation_to_type": "type", "validated": true, "ani": 85.9794, "matched_fragments": 979, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter mysorens", "strain": "strain=DSM 12798", "accession": "GCA_002797775.1", "taxid": 257984, "species_taxid": 257984, "relation_to_type": "type", "validated": true, "ani": 83.17, "matched_fragments": 727, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter arilaitensis", "strain": "strain=Re117", "accession": "GCA_000197735.1", "taxid": 256701, "species_taxid": 256701, "relation_to_type": "type", "validated": true, "ani": 83.1607, "matched_fragments": 743, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter nicotianae", "strain": "strain=NBRC 14234", "accession": "GCA_006539525.1", "taxid": 37929, "species_taxid": 37929, "relation_to_type": "type", "validated": true, "ani": 83.0423, "matched_fragments": 734, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter mysorens", "strain": "strain=NBRC 103060", "accession": "GCA_001552115.1", "taxid": 257984, "species_taxid": 257984, "relation_to_type": "type", "validated": true, "ani": 83.0357, "matched_fragments": 730, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ulcerisalmonis", "strain": "", "accession": "GCA_900609065.1", "taxid": 2483813, "species_taxid": 2483813, "relation_to_type": "type", "validated": true, "ani": 77.601, "matched_fragments": 156, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter wenxiniae", "strain": "strain=AETb3-4", "accession": "GCA_013376105.1", "taxid": 2713570, "species_taxid": 2713570, "relation_to_type": "type", "validated": true, "ani": 77.402, "matched_fragments": 198, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter terrae", "strain": "strain=Z1-20", "accession": "GCA_015708085.1", "taxid": 2935737, "species_taxid": 2935737, "relation_to_type": "type", "validated": true, "ani": 76.9728, "matched_fragments": 95, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001302565.1", "gtdb_species": "s__Glutamicibacter halophytocola", "ani": 100.0, "matched_fragments": 1302, "total_fragments": 1305, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Glutamicibacter", "halophytocola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }