{ "type": "genome", "identifier": "GCF_001306415.1", "organism": "Croceitalea dokdonensis DOKDO 023", "title": "Croceitalea dokdonensis DOKDO 023", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yonsei University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001306415.1", "bioproject": "PRJNA224116", "biosample": "SAMN03702328", "wgs_master": "LDJX00000000.1", "refseq_category": "reference genome", "taxid": "1300341", "species_taxid": "346188", "organism_name": "Croceitalea dokdonensis DOKDO 023", "infraspecific_name": "strain=DOKDO 023", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/05", "asm_name": "ASM130641v1", "asm_submitter": "Yonsei University", "gbrs_paired_asm": "GCA_001306415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/306/415/GCF_001306415.1_ASM130641v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3883802", "genome_size_ungapped": "3883802", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3407", "protein_coding_gene_count": "3344", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-05", "dateModified": "2015-10-05", "datePublished": "2015-10-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Croceitalea dokdonensis DOKDO 023" ], "sample_taxid": [ "1300341" ], "sample_host_organism": [ "Ecklonia cava subsp. kurome" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Dokdo Island" ], "sample_host_location_id": [], "data_size": "1.098 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3883802", "Number of Sequences": "16", "Longest Sequences (bp)": "794410", "N50 (bp)": "454530", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.9", "Number of CDSs": "3302", "Average Protein Length": "345.4", "Coding Ratio (%)": "88.1", "Number of rRNAs": "7", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Croceitalea dokdonensis", "strain": "strain=DOKDO 023", "accession": "GCA_001306415.1", "taxid": 346188, "species_taxid": 346188, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1283, "total_fragments": 1286, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aggregatimonas sangjinii", "strain": "strain=F202Z8", "accession": "GCA_005943945.1", "taxid": 2583587, "species_taxid": 2583587, "relation_to_type": "type", "validated": true, "ani": 77.28, "matched_fragments": 94, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda taeanensis", "strain": "strain=JCM 17757", "accession": "GCA_003584105.1", "taxid": 1005926, "species_taxid": 1005926, "relation_to_type": "type", "validated": true, "ani": 76.8441, "matched_fragments": 126, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_008017345.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 76.7961, "matched_fragments": 141, 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"organism_name": "Maribacter dokdonensis", "strain": "strain=DSW-8", "accession": "GCA_001447995.1", "taxid": 320912, "species_taxid": 320912, "relation_to_type": "type", "validated": true, "ani": 76.728, "matched_fragments": 100, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda profundi", "strain": "strain=BC31-3-A3", "accession": "GCA_017313275.1", "taxid": 2915620, "species_taxid": 2915620, "relation_to_type": "type", "validated": true, "ani": 76.6992, "matched_fragments": 133, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda parva", "strain": "strain=DSM 25885", "accession": "GCA_900215465.1", "taxid": 1247520, "species_taxid": 1247520, "relation_to_type": "type", "validated": true, "ani": 76.6877, "matched_fragments": 158, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aurea", "strain": "strain=BC31-1-A7", "accession": "GCA_017313785.1", "taxid": 2915619, "species_taxid": 2915619, "relation_to_type": "type", "validated": true, "ani": 76.685, "matched_fragments": 129, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amphidinii", "strain": "strain=LMIT004", "accession": "GCA_013090115.1", "taxid": 2735167, "species_taxid": 2735167, "relation_to_type": "type", "validated": true, "ani": 76.6359, "matched_fragments": 152, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda onchidii", "strain": "strain=XY-359", "accession": "GCA_004804315.1", "taxid": 2562684, "species_taxid": 2562684, "relation_to_type": "type", "validated": true, "ani": 76.6298, "matched_fragments": 131, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter algicola", "strain": "strain=PoM-212", "accession": "GCA_003933245.1", "taxid": 2498892, "species_taxid": 2498892, "relation_to_type": "type", "validated": true, "ani": 76.6154, "matched_fragments": 132, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda nanhaiensis", "strain": "strain=SM1704", "accession": "GCA_003382275.1", "taxid": 2292706, "species_taxid": 2292706, "relation_to_type": "type", "validated": true, "ani": 76.6117, "matched_fragments": 135, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda maritima", "strain": "strain=72", "accession": "GCA_003584135.1", "taxid": 2306998, "species_taxid": 2306998, "relation_to_type": "type", "validated": true, "ani": 76.5717, "matched_fragments": 156, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda ochracea", "strain": "strain=JGD-17", "accession": "GCA_009903685.1", "taxid": 2696472, "species_taxid": 2696472, "relation_to_type": "type", "validated": true, "ani": 76.5377, "matched_fragments": 131, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda alvinocaridis", "strain": "strain=SCR12", "accession": "GCA_004916895.1", "taxid": 2530200, "species_taxid": 2530200, "relation_to_type": "type", "validated": true, "ani": 76.5175, "matched_fragments": 148, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hymeniacidonis", "strain": "strain=176CP4-71", "accession": "GCA_004296335.1", "taxid": 2517819, "species_taxid": 2517819, "relation_to_type": "type", "validated": true, "ani": 76.4963, "matched_fragments": 130, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda sediminis", "strain": "strain=40Bstr401", "accession": "GCA_010500845.1", "taxid": 2696468, "species_taxid": 2696468, "relation_to_type": "type", "validated": true, "ani": 76.4763, "matched_fragments": 146, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda algicola", "strain": "strain=AsT0115", "accession": "GCA_005937185.1", "taxid": 2583815, "species_taxid": 2583815, "relation_to_type": "type", "validated": true, "ani": 76.4356, "matched_fragments": 139, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 76.3613, "matched_fragments": 52, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga omnivescoria", "strain": "strain=W5C", "accession": "GCA_001999725.1", "taxid": 1888890, "species_taxid": 1888890, "relation_to_type": "type", "validated": true, "ani": 76.2416, "matched_fragments": 78, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001306415.1", "gtdb_species": "s__Croceitalea dokdonensis", "ani": 100.0, "matched_fragments": 1284, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Croceitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001971785.1", "gtdb_species": "s__Seonamhaeicola sp001971785", "ani": 77.1868, "matched_fragments": 50, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001413955.1", "gtdb_species": "s__Muricauda eckloniae", "ani": 77.0914, "matched_fragments": 157, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003584105.1", "gtdb_species": "s__Muricauda taeanensis", "ani": 76.954, "matched_fragments": 127, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 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sp003584165", "ani": 76.8811, "matched_fragments": 142, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000190595.1", "gtdb_species": "s__Cellulophaga lytica", "ani": 76.8241, "matched_fragments": 81, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_013407935.1", "gtdb_species": "s__Muricauda sp013407935", "ani": 76.7885, 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