{ "type": "genome", "identifier": "GCF_001307195.1", "organism": "Acinetobacter equi", "title": "Acinetobacter equi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Robert Koch-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001307195.1", "bioproject": "PRJNA224116", "biosample": "SAMN04110325", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1324350", "species_taxid": "1324350", "organism_name": "Acinetobacter equi", "infraspecific_name": "strain=114", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/06", "asm_name": "ASM130719v1", "asm_submitter": "Robert Koch-Institut", "gbrs_paired_asm": "GCA_001307195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/307/195/GCF_001307195.1_ASM130719v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3054269", "genome_size_ungapped": "3054269", "gc_percent": "35.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "2912", "protein_coding_gene_count": "2742", "non_coding_gene_count": "112", "pubmed_id": "26620413" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-06", "dateModified": "2015-10-06", "datePublished": "2015-10-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter equi" ], "sample_taxid": [ "1324350" ], "sample_host_organism": [ "horse" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany:Minsleben" ], "sample_host_location_id": [], "data_size": "0.850 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3054269", "Number of Sequences": "1", "Longest Sequences (bp)": "3054269", "N50 (bp)": "3054269", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.9", "Number of CDSs": "2837", "Average Protein Length": "306.8", "Coding Ratio (%)": "85.5", "Number of rRNAs": "21", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter equi", "strain": "strain=114", "accession": "GCA_001307195.1", "taxid": 1324350, "species_taxid": 1324350, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1014, "total_fragments": 1018, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter portensis", "strain": "strain=AC 877", "accession": "GCA_009372215.1", "taxid": 1839785, "species_taxid": 1839785, "relation_to_type": "type", "validated": true, "ani": 81.4272, "matched_fragments": 527, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wanghuae", "strain": "strain=dk386", "accession": "GCA_009557235.1", "taxid": 2662362, "species_taxid": 2662362, "relation_to_type": "type", "validated": true, "ani": 80.677, "matched_fragments": 392, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.4827, "matched_fragments": 446, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 80.4577, "matched_fragments": 399, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4108, "matched_fragments": 418, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=DSM 14970", "accession": "GCA_000621065.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 80.3627, "matched_fragments": 397, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 80.357, "matched_fragments": 445, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.3358, "matched_fragments": 448, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.3174, "matched_fragments": 448, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter shaoyimingii", "strain": "strain=323-1", "accession": "GCA_011578045.1", "taxid": 2715164, "species_taxid": 2715164, "relation_to_type": "type", "validated": true, "ani": 80.2677, "matched_fragments": 435, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 80.2375, "matched_fragments": 326, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=CIP 107472", "accession": "GCA_000368785.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 80.1436, "matched_fragments": 403, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 80.0589, "matched_fragments": 428, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter kanungonis", "strain": "strain=PS-1", "accession": "GCA_009939195.1", "taxid": 2699469, "species_taxid": 2699469, "relation_to_type": "type", "validated": true, "ani": 80.0097, "matched_fragments": 375, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter seohaensis", "strain": "strain=DSM 16313", "accession": "GCA_018403785.1", "taxid": 281376, "species_taxid": 281376, "relation_to_type": "type", "validated": true, "ani": 79.9924, "matched_fragments": 373, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=DSM 14962", "accession": "GCA_000688495.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 79.9572, "matched_fragments": 394, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.9088, "matched_fragments": 397, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 79.8639, "matched_fragments": 415, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 79.8348, "matched_fragments": 423, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 79.8039, "matched_fragments": 406, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bereziniae", "strain": "strain=CIP 70.12", "accession": "GCA_000368925.1", "taxid": 106648, "species_taxid": 106648, "relation_to_type": "type", "validated": true, "ani": 79.7956, "matched_fragments": 412, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=CIP 107464", "accession": "GCA_000368565.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.7561, "matched_fragments": 404, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.6828, "matched_fragments": 361, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.6768, "matched_fragments": 362, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 79.6327, "matched_fragments": 410, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=MTCC 9824", "accession": "GCA_000430245.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.5349, "matched_fragments": 392, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.3997, "matched_fragments": 387, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.7368, "matched_fragments": 296, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001307195.1", "gtdb_species": "s__Acinetobacter equi", "ani": 100.0, "matched_fragments": 1012, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002135375.1", "gtdb_species": "s__Acinetobacter sp002135375", "ani": 81.7858, "matched_fragments": 597, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009707625.1", "gtdb_species": "s__Acinetobacter sp009707625", "ani": 81.557, "matched_fragments": 510, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009372215.1", "gtdb_species": "s__Acinetobacter portensis", "ani": 81.4272, "matched_fragments": 527, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002018365.1", "gtdb_species": "s__Acinetobacter sp002018365", "ani": 80.6416, "matched_fragments": 420, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.65", "min_intra_species_ani": "95.34", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 71, "status": "-" }, { "accession": "GCF_016599715.1", "gtdb_species": "s__Acinetobacter sp002135245", "ani": 80.5484, "matched_fragments": 361, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.80", "min_intra_species_ani": "96.56", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_002135295.1", "gtdb_species": "s__Acinetobacter sp002135295", "ani": 80.5015, "matched_fragments": 420, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001678755.1", "gtdb_species": "s__Acinetobacter gandensis", "ani": 80.4827, "matched_fragments": 446, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000400735.1", "gtdb_species": "s__Acinetobacter tandoii", "ani": 80.4591, "matched_fragments": 399, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002165305.2", "gtdb_species": "s__Acinetobacter sp002165305", "ani": 80.423, "matched_fragments": 410, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000368045.1", "gtdb_species": "s__Acinetobacter johnsonii", "ani": 80.3855, "matched_fragments": 414, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.19", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 59, "status": "-" }, { "accession": "GCF_002135315.1", "gtdb_species": "s__Acinetobacter sp002135315", "ani": 80.3635, "matched_fragments": 375, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004336635.1", "gtdb_species": "s__Acinetobacter sp004336635", "ani": 80.1632, "matched_fragments": 405, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.73", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900107285.1", "gtdb_species": "s__Acinetobacter kyonggiensis", "ani": 80.074, "matched_fragments": 439, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_902753875.1", "gtdb_species": 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