{ "type": "genome", "identifier": "GCF_001308265.1", "organism": "Celeribacter marinus", "title": "Celeribacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Pukyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001308265.1", "bioproject": "PRJNA224116", "biosample": "SAMN03837864", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1397108", "species_taxid": "1397108", "organism_name": "Celeribacter marinus", "infraspecific_name": "strain=IMCC12053", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/08", "asm_name": "ASM130826v1", "asm_submitter": "Pukyong National University", "gbrs_paired_asm": "GCA_001308265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/308/265/GCF_001308265.1_ASM130826v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3096705", "genome_size_ungapped": "3096705", "gc_percent": "56.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3098", "protein_coding_gene_count": "3013", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-08", "dateModified": "2015-10-08", "datePublished": "2015-10-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Celeribacter marinus" ], "sample_taxid": [ "1397108" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3096705", "Number of Sequences": "1", "Longest Sequences (bp)": "3096705", "N50 (bp)": "3096705", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.2", "Number of CDSs": "3110", "Average Protein Length": "297.8", "Coding Ratio (%)": "89.7", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Celeribacter marinus", "strain": "strain=IMCC12053", "accession": "GCA_001308265.1", "taxid": 1397108, "species_taxid": 1397108, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1031, "total_fragments": 1032, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Celeribacter marinus", "strain": "strain=DSM 100036", "accession": "GCA_900114275.1", "taxid": 1397108, "species_taxid": 1397108, "relation_to_type": "type", "validated": true, "ani": 99.9742, "matched_fragments": 972, "total_fragments": 1032, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Celeribacter baekdonensis", "strain": "strain=DSM 27375", "accession": "GCA_900102315.1", "taxid": 875171, "species_taxid": 875171, "relation_to_type": "type", "validated": true, "ani": 78.0592, "matched_fragments": 330, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 77.8717, "matched_fragments": 215, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=ZXM137", "accession": "GCA_001550085.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 77.8662, "matched_fragments": 279, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=DSM 26270", "accession": "GCA_003254175.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 77.7767, "matched_fragments": 283, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter ethanolicus", "strain": "strain=NH195", "accession": "GCA_001550095.1", "taxid": 1758178, "species_taxid": 1758178, "relation_to_type": "type", "validated": true, "ani": 77.7396, "matched_fragments": 256, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=CGMCC 1.8891", "accession": "GCA_900114135.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 77.7309, "matched_fragments": 281, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimixticola soesokkakensis", "strain": "strain=CECT 8620", "accession": "GCA_900172375.1", "taxid": 1519096, "species_taxid": 1519096, "relation_to_type": "type", "validated": true, "ani": 77.5637, "matched_fragments": 206, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter neptunius", "strain": "strain=DSM 26471", "accession": "GCA_900113955.1", "taxid": 588602, "species_taxid": 588602, "relation_to_type": "type", "validated": true, "ani": 77.4612, "matched_fragments": 238, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificibacter maritimus", "strain": "strain=DSM 104731", "accession": "GCA_003814915.1", "taxid": 762213, "species_taxid": 762213, "relation_to_type": "type", "validated": true, "ani": 77.2997, "matched_fragments": 179, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium pelagium", "strain": "strain=JN33", "accession": "GCA_002285415.1", "taxid": 2029103, "species_taxid": 2029103, "relation_to_type": "type", "validated": true, "ani": 77.2706, "matched_fragments": 121, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_000819565.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 77.2555, "matched_fragments": 175, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia haliotis", "strain": "strain=DSM 28453", "accession": "GCA_900114415.1", "taxid": 1280847, "species_taxid": 1280847, 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"matched_fragments": 105, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 76.1271, "matched_fragments": 69, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001308265.1", "gtdb_species": "s__Celeribacter_A marinus", "ani": 100.0, "matched_fragments": 1031, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, 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