{ "type": "genome", "identifier": "GCF_001308855.1", "organism": "Pseudomonas nunensis", "title": "Pseudomonas nunensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Copenhagen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001308855.1", "bioproject": "PRJNA224116", "biosample": "SAMN03992868", "wgs_master": "LIRD00000000.1", "refseq_category": "na", "taxid": "2961896", "species_taxid": "2961896", "organism_name": "Pseudomonas nunensis", "infraspecific_name": "strain=In5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/09", "asm_name": "ASM130885v1", "asm_submitter": "University of Copenhagen", "gbrs_paired_asm": "GCA_001308855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/308/855/GCF_001308855.1_ASM130885v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7318798", "genome_size_ungapped": "7297000", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-03", "total_gene_count": "6509", "protein_coding_gene_count": "6334", "non_coding_gene_count": "69", "pubmed_id": "25784695" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-09", "dateModified": "2015-10-09", "datePublished": "2015-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas nunensis" ], "sample_taxid": [ "2961896" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Greenland: Inneruulalik" ], "sample_host_location_id": [], "data_size": "2.038 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7318798", "Number of Sequences": "18", "Longest Sequences (bp)": "3956161", "N50 (bp)": "3956161", "Gap Ratio (%)": "0.297972", "GCcontent (%)": "59.4", "Number of CDSs": "6470", "Average Protein Length": "331.5", "Coding Ratio (%)": "87.9", "Number of rRNAs": "5", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas mandelii", "strain": "strain=DSM 17967", "accession": "GCA_007858265.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1115, "matched_fragments": 1692, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=LMG 21607", "accession": "GCA_900106065.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0785, "matched_fragments": 1717, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=NBRC 103147", "accession": "GCA_002091695.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.051, "matched_fragments": 1675, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas farris", "strain": "strain=SWRI79", "accession": "GCA_019145235.1", "taxid": 2841207, "species_taxid": 2841207, "relation_to_type": "type", "validated": true, "ani": 87.9543, "matched_fragments": 1617, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=DSM 16768", "accession": "GCA_001042905.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 87.8851, "matched_fragments": 1598, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=CCUG 51522", "accession": "GCA_008801525.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 87.8371, "matched_fragments": 1607, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoriens", "strain": "strain=SWRI123", "accession": "GCA_019139795.1", "taxid": 2842350, "species_taxid": 2842350, "relation_to_type": "type", "validated": true, "ani": 86.7633, "matched_fragments": 1513, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfatiphila", "strain": "strain=AP3_16", "accession": "GCA_002934665.1", "taxid": 2011015, "species_taxid": 2011015, "relation_to_type": "type", "validated": true, "ani": 86.7281, "matched_fragments": 1544, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=MT1", "accession": "GCA_001945365.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 86.6937, "matched_fragments": 1469, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jessenii", "strain": "strain=DSM 17150", "accession": "GCA_002236115.1", "taxid": 77298, "species_taxid": 77298, "relation_to_type": "suspected-type", "validated": true, "ani": 86.6854, "matched_fragments": 1533, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=CCUG 53116", "accession": "GCA_008801455.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 86.6561, "matched_fragments": 1479, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 86.5581, "matched_fragments": 1518, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoccidens", "strain": "strain=SWRI74", "accession": "GCA_019145495.1", "taxid": 2842347, "species_taxid": 2842347, "relation_to_type": "type", "validated": true, "ani": 86.5318, "matched_fragments": 1545, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfativorans", "strain": "strain=AP3_22", "accession": "GCA_002906155.1", "taxid": 1943631, "species_taxid": 1943631, "relation_to_type": "type", "validated": true, "ani": 86.5194, "matched_fragments": 1541, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 86.3182, "matched_fragments": 1648, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 86.1373, "matched_fragments": 1601, "total_fragments": 2435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 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