{ "tc_result": [ { "organism_name": "Nocardia arizonensis", "strain": "strain=W9405", "accession": "GCA_001310275.1", "taxid": 1141647, "species_taxid": 1141647, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2339, "total_fragments": 2340, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardia arizonensis", "strain": "strain=NBRC 108935", "accession": "GCA_001618405.1", "taxid": 1141647, "species_taxid": 1141647, "relation_to_type": "type", "validated": true, "ani": 99.9826, "matched_fragments": 2306, "total_fragments": 2340, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardia takedensis", "strain": "strain=NBRC 100417", "accession": "GCA_000308695.1", "taxid": 259390, "species_taxid": 259390, "relation_to_type": "type", "validated": true, "ani": 84.5896, "matched_fragments": 1471, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia bovistercoris", "strain": "strain=NEAU-351", "accession": "GCA_015674855.1", "taxid": 2785916, "species_taxid": 2785916, "relation_to_type": "type", "validated": true, "ani": 84.3953, "matched_fragments": 1525, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia noduli", "strain": "strain=ncl1", "accession": "GCA_019038455.1", "taxid": 2815722, "species_taxid": 2815722, "relation_to_type": "type", "validated": true, "ani": 82.7983, "matched_fragments": 1393, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia aurea", "strain": "strain=SYSU K10002", "accession": "GCA_003123685.1", "taxid": 2144174, "species_taxid": 2144174, "relation_to_type": "type", "validated": true, "ani": 82.5061, "matched_fragments": 1441, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia bhagyanarayanae", "strain": "strain=DSM 103495", "accession": "GCA_006716565.1", "taxid": 1215925, "species_taxid": 1215925, "relation_to_type": "type", "validated": true, "ani": 81.8598, "matched_fragments": 1238, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia amikacinitolerans", "strain": "strain=NBRC 108937", "accession": "GCA_001612615.1", "taxid": 756689, "species_taxid": 756689, "relation_to_type": "type", "validated": true, "ani": 81.8421, "matched_fragments": 1231, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia amikacinitolerans", "strain": "strain=DSM 45539", "accession": "GCA_024172045.1", "taxid": 756689, "species_taxid": 756689, "relation_to_type": "type", "validated": true, "ani": 81.8382, "matched_fragments": 1243, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia lijiangensis", "strain": "strain=NBRC 108240", "accession": "GCA_001613045.1", "taxid": 299618, "species_taxid": 299618, "relation_to_type": "type", "validated": true, "ani": 81.7499, "matched_fragments": 1219, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia beijingensis", "strain": "strain=NBRC 16342", "accession": "GCA_001612785.1", "taxid": 95162, "species_taxid": 95162, "relation_to_type": "type", "validated": true, "ani": 81.1421, "matched_fragments": 1168, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia higoensis", "strain": "strain=NBRC 100133", "accession": "GCA_000308595.1", "taxid": 228599, "species_taxid": 228599, "relation_to_type": "type", "validated": true, "ani": 81.1087, "matched_fragments": 1100, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia africana", "strain": "strain=FDAARGOS_1597", "accession": "GCA_020731565.1", "taxid": 134964, "species_taxid": 134964, "relation_to_type": "type", "validated": true, "ani": 79.5757, "matched_fragments": 981, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia africana", "strain": "strain=NBRC 100379", "accession": "GCA_001612635.1", "taxid": 134964, "species_taxid": 134964, "relation_to_type": "type", "validated": true, "ani": 79.5439, "matched_fragments": 974, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia veterana", "strain": "strain=NBRC 100344", "accession": "GCA_000308855.1", "taxid": 132249, "species_taxid": 132249, "relation_to_type": "type", "validated": true, "ani": 79.3316, "matched_fragments": 894, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 76.4575, "matched_fragments": 438, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.39, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001310275.1", "gtdb_species": "s__Nocardia arizonensis", "ani": 100.0, "matched_fragments": 2339, "total_fragments": 2340, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000308695.1", "gtdb_species": "s__Nocardia takedensis", "ani": 84.5771, "matched_fragments": 1472, "total_fragments": 2340, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015674855.1", "gtdb_species": "s__Nocardia bovistercoris", "ani": 84.4073, "matched_fragments": 1524, "total_fragments": 2340, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003123685.1", "gtdb_species": "s__Nocardia aurea", "ani": 82.5043, "matched_fragments": 1441, "total_fragments": 2340, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.19", "min_intra_species_ani": "95.19", 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"min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001613045.1", "gtdb_species": "s__Nocardia lijiangensis", "ani": 81.7613, "matched_fragments": 1218, "total_fragments": 2340, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001182745.1", "gtdb_species": "s__Nocardia farcinica", "ani": 81.7315, "matched_fragments": 1126, "total_fragments": 2340, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.59", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", 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"total_fragments": 2340, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016464305.1", "gtdb_species": "s__REN6 sp016464305", "ani": 76.3529, "matched_fragments": 443, "total_fragments": 2340, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__REN6", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }