{
    "type": "genome",
    "identifier": "GCF_001310815.1",
    "organism": "Pseudovibrio denitrificans JCM 12308",
    "title": "Pseudovibrio denitrificans JCM 12308",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001310815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00000429",
        "wgs_master": "BAZK00000000.1",
        "refseq_category": "na",
        "taxid": "1236962",
        "species_taxid": "258256",
        "organism_name": "Pseudovibrio denitrificans JCM 12308",
        "infraspecific_name": "strain=JCM 12308",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/02",
        "asm_name": "ASM131081v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_001310815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/310/815/GCF_001310815.1_ASM131081v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6053738",
        "genome_size_ungapped": "6053738",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "94",
        "contig_count": "94",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001310815.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "5919",
        "protein_coding_gene_count": "5356",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-02",
    "dateModified": "2015-10-02",
    "datePublished": "2015-10-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudovibrio denitrificans JCM 12308"
        ],
        "sample_taxid": [
            "1236962"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "NA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.726 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6053738",
        "Number of Sequences": "94",
        "Longest Sequences (bp)": "421911",
        "N50 (bp)": "240940",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.2",
        "Number of CDSs": "6080",
        "Average Protein Length": "278.4",
        "Coding Ratio (%)": "83.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pseudovibrio denitrificans",
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                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_900116575.1",
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                "relation_to_type": "type",
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                "matched_fragments": 1971,
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            },
            {
                "organism_name": "Pseudovibrio brasiliensis",
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                "species_taxid": 1898042,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudovibrio ascidiaceicola",
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                "accession": "GCA_900114245.1",
                "taxid": 285279,
                "species_taxid": 285279,
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                "validated": true,
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                "matched_fragments": 1544,
                "total_fragments": 1974,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudovibrio japonicus",
                "strain": "strain=KCTC 12861",
                "accession": "GCA_014651595.1",
                "taxid": 366534,
                "species_taxid": 366534,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1135,
                "total_fragments": 1974,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudovibrio flavus",
                "strain": "strain=RKSG542",
                "accession": "GCA_009711345.1",
                "taxid": 2529854,
                "species_taxid": 2529854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0836,
                "matched_fragments": 303,
                "total_fragments": 1974,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stappia albiluteola",
                "strain": "strain=F7233",
                "accession": "GCA_014050225.1",
                "taxid": 2758565,
                "species_taxid": 2758565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9302,
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                "total_fragments": 1974,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_001310815.1",
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                "matched_fragments": 1970,
                "total_fragments": 1974,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Pseudovibrio",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_018282095.1",
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            },
            {
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                "matched_fragments": 1542,
                "total_fragments": 1974,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Pseudovibrio",
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                "status": "-"
            },
            {
                "accession": "GCF_900143565.1",
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                "num_clustered_genomes": 8,
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            },
            {
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Pseudovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Pseudovibrio",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.511,
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        "optimum_tmp": 29.333,
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        "genome_size": 6061089.5,
        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pseudovibrio",
        "denitrificans",
        "JCM",
        "12308"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}