{
    "type": "genome",
    "identifier": "GCF_001310975.1",
    "organism": "Thermoanaerobacter thermocopriae JCM 7501",
    "title": "Thermoanaerobacter thermocopriae JCM 7501",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001310975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00000470",
        "wgs_master": "BAZY00000000.1",
        "refseq_category": "na",
        "taxid": "1291048",
        "species_taxid": "29350",
        "organism_name": "Thermoanaerobacter thermocopriae JCM 7501",
        "infraspecific_name": "strain=JCM 7501",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/01",
        "asm_name": "ASM131097v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_001310975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/310/975/GCF_001310975.1_ASM131097v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2452939",
        "genome_size_ungapped": "2452939",
        "gc_percent": "34.000000",
        "replicon_count": "0",
        "scaffold_count": "78",
        "contig_count": "78",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001310975.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "2635",
        "protein_coding_gene_count": "1901",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-01",
    "dateModified": "2015-10-01",
    "datePublished": "2015-10-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermoanaerobacter thermocopriae JCM 7501"
        ],
        "sample_taxid": [
            "1291048"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "NA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.686 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 94.79,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2452939",
        "Number of Sequences": "78",
        "Longest Sequences (bp)": "201284",
        "N50 (bp)": "60195",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.2",
        "Number of CDSs": "3046",
        "Average Protein Length": "230.0",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermoanaerobacter thermocopriae",
                "strain": "strain=JCM 7501",
                "accession": "GCA_001310975.1",
                "taxid": 29350,
                "species_taxid": 29350,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 779,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermoanaerobacter thermocopriae",
                "strain": "strain=ATCC 51646",
                "accession": "GCA_000518565.1",
                "taxid": 29350,
                "species_taxid": 29350,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9193,
                "matched_fragments": 765,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermoanaerobacter siderophilus",
                "strain": "strain=SR4",
                "accession": "GCA_000262445.1",
                "taxid": 106578,
                "species_taxid": 106578,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9145,
                "matched_fragments": 605,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermoanaerobacter wiegelii",
                "strain": "strain=Rt8.B1",
                "accession": "GCA_000147695.3",
                "taxid": 46354,
                "species_taxid": 46354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6101,
                "matched_fragments": 606,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermoanaerobacter uzonensis",
                "strain": "strain=DSM 18761",
                "accession": "GCA_900129115.1",
                "taxid": 447593,
                "species_taxid": 447593,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0879,
                "matched_fragments": 568,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermoanaerobacter kivui",
                "strain": "strain=DSM 2030; LKT-1",
                "accession": "GCA_000763575.1",
                "taxid": 2325,
                "species_taxid": 2325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2216,
                "matched_fragments": 505,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 94.79,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001310975.1",
                "gtdb_species": "s__Thermoanaerobacter thermocopriae",
                "ani": 100.0,
                "matched_fragments": 779,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "96.24",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000019085.1",
                "gtdb_species": "s__Thermoanaerobacter pseudethanolicus",
                "ani": 91.6375,
                "matched_fragments": 580,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter",
                "ani_circumscription_radius": 95.1128,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.55",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_000445185.1",
                "gtdb_species": "s__Thermoanaerobacter sp000445185",
                "ani": 90.9546,
                "matched_fragments": 537,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter",
                "ani_circumscription_radius": 95.9754,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003722315.1",
                "gtdb_species": "s__Thermoanaerobacter ethanolicus",
                "ani": 90.6706,
                "matched_fragments": 613,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter",
                "ani_circumscription_radius": 96.9409,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "97.61",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000147695.2",
                "gtdb_species": "s__Thermoanaerobacter wiegelii",
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                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter",
                "ani_circumscription_radius": 96.9409,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129115.1",
                "gtdb_species": "s__Thermoanaerobacter uzonensis",
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                "matched_fragments": 567,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.59",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014896455.1",
                "gtdb_species": "s__Thermoanaerobacter sp014896455",
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                "matched_fragments": 506,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter",
                "ani_circumscription_radius": 95.6271,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000763575.1",
                "gtdb_species": "s__Thermoanaerobacter kivui",
                "ani": 86.2577,
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                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.353,
        "cell_length": 0.346,
        "doubling_h": 0.145,
        "growth_tmp": 60.0,
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        "optimum_ph": 7.192,
        "genome_size": 2454527.5,
        "gc_content": 34.525,
        "coding_genes": 2284.4,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 56.2,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.888,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thermoanaerobacter",
        "thermocopriae",
        "JCM",
        "7501"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}