{ "type": "genome", "identifier": "GCF_001311135.1", "organism": "Secundilactobacillus paracollinoides DSM 15502 = JCM 11969", "title": "Secundilactobacillus paracollinoides DSM 15502 = JCM 11969", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001311135.1", "bioproject": "PRJNA224116", "biosample": "SAMD00000423", "wgs_master": "BBAG00000000.1", "refseq_category": "na", "taxid": "1423785", "species_taxid": "240427", "organism_name": "Secundilactobacillus paracollinoides DSM 15502 = JCM 11969", "infraspecific_name": "strain=JCM 11969", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/02", "asm_name": "ASM131113v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_001311135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/311/135/GCF_001311135.1_ASM131113v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3510481", "genome_size_ungapped": "3510481", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "170", "contig_count": "170", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001311135.1-RS_2024_08_09", "annotation_date": "2024-08-09", "total_gene_count": "3598", "protein_coding_gene_count": "2813", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-02", "dateModified": "2015-10-02", "datePublished": "2015-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Secundilactobacillus paracollinoides DSM 15502 = JCM 11969" ], "sample_taxid": [ "1423785" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.008 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3510481", "Number of Sequences": "170", "Longest Sequences (bp)": "294450", "N50 (bp)": "49378", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.8", "Number of CDSs": "3958", "Average Protein Length": "227.9", "Coding Ratio (%)": "77.1", "Number of rRNAs": "2", "Number of tRNAs": "65", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Secundilactobacillus paracollinoides", "strain": "strain=JCM 11969", "accession": "GCA_001311135.1", "taxid": 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