{
    "type": "genome",
    "identifier": "GCF_001312045.1",
    "organism": "Liquorilactobacillus satsumensis DSM 16230 = JCM 12392",
    "title": "Liquorilactobacillus satsumensis DSM 16230 = JCM 12392",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001312045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00000518",
        "wgs_master": "BBCQ00000000.1",
        "refseq_category": "na",
        "taxid": "1423801",
        "species_taxid": "259059",
        "organism_name": "Liquorilactobacillus satsumensis DSM 16230 = JCM 12392",
        "infraspecific_name": "strain=JCM 12392",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/01",
        "asm_name": "ASM131204v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_001312045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/312/045/GCF_001312045.1_ASM131204v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2635695",
        "genome_size_ungapped": "2635695",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "122",
        "contig_count": "122",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-08-06",
        "total_gene_count": "2853",
        "protein_coding_gene_count": "2099",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-01",
    "dateModified": "2015-10-01",
    "datePublished": "2015-10-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Liquorilactobacillus satsumensis DSM 16230 = JCM 12392"
        ],
        "sample_taxid": [
            "1423801"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.751 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2635695",
        "Number of Sequences": "122",
        "Longest Sequences (bp)": "117008",
        "N50 (bp)": "44489",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.1",
        "Number of CDSs": "3406",
        "Average Protein Length": "212.0",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Liquorilactobacillus satsumensis",
                "strain": "strain=JCM 12392",
                "accession": "GCA_001312045.1",
                "taxid": 259059,
                "species_taxid": 259059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 816,
                "total_fragments": 820,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Liquorilactobacillus satsumensis",
                "strain": "strain=DSM 16230",
                "accession": "GCA_001435195.1",
                "taxid": 259059,
                "species_taxid": 259059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.7807,
                "matched_fragments": 811,
                "total_fragments": 820,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Liquorilactobacillus oeni",
                "strain": "strain=DSM 19972",
                "accession": "GCA_001436275.1",
                "taxid": 303241,
                "species_taxid": 303241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0852,
                "matched_fragments": 247,
                "total_fragments": 820,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus uvarum",
                "strain": "strain=DSM 19971",
                "accession": "GCA_001434935.1",
                "taxid": 303240,
                "species_taxid": 303240,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9221,
                "matched_fragments": 123,
                "total_fragments": 820,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus capillatus",
                "strain": "strain=DSM 19910",
                "accession": "GCA_001434915.1",
                "taxid": 480931,
                "species_taxid": 480931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7996,
                "matched_fragments": 111,
                "total_fragments": 820,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus cacaonum",
                "strain": "strain=DSM 21116",
                "accession": "GCA_001436735.1",
                "taxid": 483012,
                "species_taxid": 483012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5995,
                "matched_fragments": 105,
                "total_fragments": 820,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus vini",
                "strain": "strain=DSM 20605",
                "accession": "GCA_000255495.2",
                "taxid": 238015,
                "species_taxid": 238015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.944,
                "matched_fragments": 66,
                "total_fragments": 820,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus vini",
                "strain": "strain=DSM 20605",
                "accession": "GCA_001435395.1",
                "taxid": 238015,
                "species_taxid": 238015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.834,
                "matched_fragments": 64,
                "total_fragments": 820,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001435195.1",
                "gtdb_species": "s__Liquorilactobacillus satsumensis",
                "ani": 99.7807,
                "matched_fragments": 811,
                "total_fragments": 820,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001436275.1",
                "gtdb_species": "s__Liquorilactobacillus oeni",
                "ani": 79.0661,
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                "total_fragments": 820,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001434935.1",
                "gtdb_species": "s__Liquorilactobacillus uvarum",
                "ani": 77.9221,
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                "total_fragments": 820,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001434915.1",
                "gtdb_species": "s__Liquorilactobacillus capillatus",
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                "matched_fragments": 113,
                "total_fragments": 820,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001436735.1",
                "gtdb_species": "s__Liquorilactobacillus cacaonum",
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                "matched_fragments": 105,
                "total_fragments": 820,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000255495.1",
                "gtdb_species": "s__Liquorilactobacillus vini",
                "ani": 76.9439,
                "matched_fragments": 66,
                "total_fragments": 820,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Liquorilactobacillus",
        "satsumensis",
        "DSM",
        "16230",
        "=",
        "JCM",
        "12392"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}