{ "type": "genome", "identifier": "GCF_001312345.1", "organism": "Methylogaea oryzae JCM 16910", "title": "Methylogaea oryzae JCM 16910", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001312345.1", "bioproject": "PRJNA224116", "biosample": "SAMD00000538", "wgs_master": "BBDL00000000.1", "refseq_category": "na", "taxid": "493385", "species_taxid": "1295382", "organism_name": "Methylogaea oryzae JCM 16910", "infraspecific_name": "strain=JCM 16910", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/02", "asm_name": "ASM131234v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_001312345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/312/345/GCF_001312345.1_ASM131234v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3696254", "genome_size_ungapped": "3696254", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "990", "contig_count": "990", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001312345.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4990", "protein_coding_gene_count": "4026", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-02", "dateModified": "2015-10-02", "datePublished": "2015-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylogaea oryzae JCM 16910" ], "sample_taxid": [ "493385" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioflavicoccus mobilis", "strain": "strain=8321", "accession": "GCA_000327045.1", "taxid": 80679, "species_taxid": 80679, "relation_to_type": "type", "validated": true, "ani": 76.8041, "matched_fragments": 64, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.7682, "matched_fragments": 107, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.7568, "matched_fragments": 120, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { 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