{ "type": "genome", "identifier": "GCF_001313125.1", "organism": "Verrucomicrobium spinosum DSM 4136 = JCM 18804", "title": "Verrucomicrobium spinosum DSM 4136 = JCM 18804", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001313125.1", "bioproject": "PRJNA224116", "biosample": "SAMD00016819", "wgs_master": "BBFG00000000.1", "refseq_category": "na", "taxid": "240016", "species_taxid": "2736", "organism_name": "Verrucomicrobium spinosum DSM 4136 = JCM 18804", "infraspecific_name": "strain=JCM 18804", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/02", "asm_name": "ASM131312v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_001313125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/313/125/GCF_001313125.1_ASM131312v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7991813", "genome_size_ungapped": "7991813", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "482", "contig_count": "482", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001313125.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "9365", "protein_coding_gene_count": "8392", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-02", "dateModified": "2015-10-02", "datePublished": "2015-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucomicrobium spinosum DSM 4136 = JCM 18804" ], "sample_taxid": [ "240016" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "2.265 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7991813", "Number of Sequences": "482", "Longest Sequences (bp)": "192301", "N50 (bp)": "40060", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "9244", "Average Protein Length": "228.8", "Coding Ratio (%)": "79.4", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=JCM 18804", "accession": "GCA_001313125.1", "taxid": 2736, 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