{
    "type": "genome",
    "identifier": "GCF_001313225.1",
    "organism": "Secundilactobacillus silagei JCM 19001",
    "title": "Secundilactobacillus silagei JCM 19001",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001313225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00016946",
        "wgs_master": "BBFL00000000.1",
        "refseq_category": "na",
        "taxid": "1302250",
        "species_taxid": "1293415",
        "organism_name": "Secundilactobacillus silagei JCM 19001",
        "infraspecific_name": "strain=JCM 19001",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/01",
        "asm_name": "ASM131322v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_001313225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/313/225/GCF_001313225.1_ASM131322v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2650200",
        "genome_size_ungapped": "2650200",
        "gc_percent": "45.000000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001313225.1-RS_2024_08_08",
        "annotation_date": "2024-08-08",
        "total_gene_count": "3020",
        "protein_coding_gene_count": "2198",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-01",
    "dateModified": "2015-10-01",
    "datePublished": "2015-10-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Secundilactobacillus silagei JCM 19001"
        ],
        "sample_taxid": [
            "1302250"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.756 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.45,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2650200",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "370321",
        "N50 (bp)": "118517",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.8",
        "Number of CDSs": "3566",
        "Average Protein Length": "202.0",
        "Coding Ratio (%)": "81.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Secundilactobacillus silagei",
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                "accession": "GCA_001313225.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 858,
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                "ani_threshold": 95,
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            },
            {
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                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Secundilactobacillus silagei",
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            },
            {
                "organism_name": "Secundilactobacillus hailunensis",
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                "species_taxid": 2559923,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus yichangensis",
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                "accession": "GCA_016861565.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus pentosiphilus",
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                "taxid": 1714682,
                "species_taxid": 1714682,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 472,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus angelensis",
                "strain": "strain=HBUAS51383",
                "accession": "GCA_012641075.1",
                "taxid": 2722706,
                "species_taxid": 2722706,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus mixtipabuli",
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                "accession": "GCA_002217925.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus silagincola",
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                "accession": "GCA_002583405.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2264,
                "matched_fragments": 487,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus odoratitofui",
                "strain": "strain=JCM 15043",
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                "taxid": 480930,
                "species_taxid": 480930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9555,
                "matched_fragments": 269,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus collinoides",
                "strain": "strain=JCM 1123",
                "accession": "GCA_001312845.1",
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                "species_taxid": 33960,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_002217945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
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        "rRNA16S_genes": null,
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        "gram_stain": null,
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        "facultative_respiration": null,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
        "Secundilactobacillus",
        "silagei",
        "JCM",
        "19001"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}