{ "type": "genome", "identifier": "GCF_001399755.1", "organism": "Thiohalorhabdus denitrificans", "title": "Thiohalorhabdus denitrificans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "California Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001399755.1", "bioproject": "PRJNA224116", "biosample": "SAMN04025648", "wgs_master": "LJCP00000000.1", "refseq_category": "reference genome", "taxid": "381306", "species_taxid": "381306", "organism_name": "Thiohalorhabdus denitrificans", "infraspecific_name": "strain=HL 19", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/19", "asm_name": "ASM139975v1", "asm_submitter": "California Institute of Technology", "gbrs_paired_asm": "GCA_001399755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/399/755/GCF_001399755.1_ASM139975v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2869005", "genome_size_ungapped": "2869005", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001399755.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "2757", "protein_coding_gene_count": "2691", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-19", "dateModified": "2015-10-19", "datePublished": "2015-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Thiohalorhabdus denitrificans" ], "sample_taxid": [ "381306" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Siberia, Altai" ], "sample_host_location_id": [], "data_size": "0.783 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2869005", "Number of Sequences": "15", "Longest Sequences (bp)": "605137", "N50 (bp)": "390112", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "2741", "Average Protein Length": "311.5", "Coding Ratio (%)": "89.3", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_001399755.1", "taxid": 381306, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 76.9537, "matched_fragments": 202, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 76.9382, "matched_fragments": 168, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio thiocyanodenitrificans", "strain": "strain=ARhD 1", "accession": "GCA_000378965.1", "taxid": 243063, "species_taxid": 243063, "relation_to_type": "type", "validated": true, "ani": 76.8345, "matched_fragments": 133, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 76.8176, "matched_fragments": 125, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 76.7919, "matched_fragments": 122, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 76.7718, "matched_fragments": 164, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorhodospira 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"GCA_016583825.1", "taxid": 69359, "species_taxid": 69359, "relation_to_type": "type", "validated": true, "ani": 76.5628, "matched_fragments": 160, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio versutus", "strain": "strain=AL 2", "accession": "GCA_001999325.1", "taxid": 106634, "species_taxid": 106634, "relation_to_type": "type", "validated": true, "ani": 76.3677, "matched_fragments": 110, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 76.0744, "matched_fragments": 129, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia beijingensis", "strain": "strain=GCS-AN-3", "accession": "GCA_013423955.1", "taxid": 1207057, "species_taxid": 1207057, 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