{
    "type": "genome",
    "identifier": "GCF_001400835.1",
    "organism": "Pseudomonas syringae pv. helianthi",
    "title": "Pseudomonas syringae pv. helianthi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Toronto",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001400835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03976278",
        "wgs_master": "LJQM00000000.1",
        "refseq_category": "na",
        "taxid": "251654",
        "species_taxid": "251699",
        "organism_name": "Pseudomonas syringae pv. helianthi",
        "infraspecific_name": "strain=ICMP 4531",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/20",
        "asm_name": "PheICMP4531",
        "asm_submitter": "University of Toronto",
        "gbrs_paired_asm": "GCA_001400835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/400/835/GCF_001400835.1_PheICMP4531",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6208545",
        "genome_size_ungapped": "6208348",
        "gc_percent": "58.000000",
        "replicon_count": "0",
        "scaffold_count": "277",
        "contig_count": "277",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001400835.1-RS_2024_05_11",
        "annotation_date": "2024-05-11",
        "total_gene_count": "5815",
        "protein_coding_gene_count": "5480",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-20",
    "dateModified": "2015-10-20",
    "datePublished": "2015-10-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas syringae pv. helianthi"
        ],
        "sample_taxid": [
            "251654"
        ],
        "sample_host_organism": [
            "Helianthus annuus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mexico"
        ],
        "sample_host_location_id": [],
        "data_size": "1.770 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6208545",
        "Number of Sequences": "277",
        "Longest Sequences (bp)": "205915",
        "N50 (bp)": "54333",
        "Gap Ratio (%)": "0.004059",
        "GCcontent (%)": "58.1",
        "Number of CDSs": "5595",
        "Average Protein Length": "313.4",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
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                "accession": "GCA_001400835.1",
                "taxid": 251699,
                "species_taxid": 251699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1931,
                "total_fragments": 1942,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
                "strain": "strain=LMG 5067",
                "accession": "GCA_022557235.1",
                "taxid": 251699,
                "species_taxid": 251699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9944,
                "matched_fragments": 1941,
                "total_fragments": 1942,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
                "strain": "strain=ICMP 4091",
                "accession": "GCA_001401315.1",
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                "species_taxid": 251699,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 99.0138,
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                "total_fragments": 1942,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
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                "accession": "GCA_022557255.1",
                "taxid": 251699,
                "species_taxid": 251699,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 98.9725,
                "matched_fragments": 1799,
                "total_fragments": 1942,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas caricapapayae",
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                "accession": "GCA_008692855.1",
                "taxid": 46678,
                "species_taxid": 46678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.4999,
                "matched_fragments": 1744,
                "total_fragments": 1942,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas amygdali",
                "strain": "strain=DSM 105780",
                "accession": "GCA_022828345.1",
                "taxid": 47877,
                "species_taxid": 47877,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 89.5189,
                "matched_fragments": 1572,
                "total_fragments": 1942,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas urethralis",
                "strain": "strain=BML-PP042",
                "accession": "GCA_021602465.1",
                "taxid": 2740517,
                "species_taxid": 2740517,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.5938,
                "matched_fragments": 693,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas urethralis",
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                "accession": "GCA_013373915.1",
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                "species_taxid": 2740517,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 679,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001400735.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCF_002699855.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
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                "num_clustered_genomes": 226,
                "status": "-"
            },
            {
                "accession": "GCF_900074915.1",
                "gtdb_species": "s__Pseudomonas_E cerasi",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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                "num_clustered_genomes": 51,
                "status": "-"
            },
            {
                "accession": "GCF_900103225.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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            {
                "accession": "GCF_009176725.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "0.88",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.248,
        "cell_length": 0.186,
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        "growth_tmp": 25.333,
        "optimum_tmp": 26.481,
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        "coding_genes": 5386.458,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Pseudomonas",
        "syringae",
        "pv.",
        "helianthi"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}